Detail information of BGIOSGA031731_circ_g.1


General Information
CircRNA Name BGIOSGA031731_circ_g.1
ID in PlantcircBase osi_circ_008497
Alias Chr10:19291301_19292493(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15817382-15818576  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2
Parent gene BGIOSGA031731
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031734_circ_igg.1 BGIOSGA031734_circ_igg.2 BGIOSGA031731_circ_igg.1 BGIOSGA031734_circ_g.1 BGIOSGA031734_circ_g.2 BGIOSGA033093_circ_g.1 BGIOSGA033093_circ_g.2 BGIOSGA031731_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   AA-CA
Number of exons covered BGIOSGA031731-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCGCAGAAGAATATCACGCAATTGCTAACTCGGCAGTGTGATCTCTTCAATGTATGGATGC
AATTGTAATTTCCCTCCTCGCTTCCTTGCCAAATTTcctgaaaaaagaacttgaatgagttgcc
ggagtatcacacctgcgtcttcacatcccaaattttgacaacagcttcagtggtccctgtcccc
aggataag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAAAAAAGAACTTGAATGAGTTGCCGGAGTATCACACCTGCGTCTTCACATCCCAAATTTT
GACAACAGCTTCAGTGGTCCCTGTCCCCAGGATAAGACCATCTGGGTGGAAAGATGCAGATGTA
TATCCCTCTTGTCCTGAAGACTCGCCCACCTGAGTAAAGAAAAGGTATTCATTAACTCATAAAC
ATCTTGGGAGCTAACAGACAAAGCATGTATAAGTACATGGATGAATGGGAGCAGGTTACATGAG
AAAGATAATGGAGTAAACCTGTGTGAGGCAAGATCCTGATGGAATATCGTAGAAGCACCAAGTA
TTATCCTTGGAAGCAGTCACAAAGTACTTCTGAGTCGCATGGACTGTAACAGCTTCAACCTGAC
AGATTTTTGTAAAACAAATAAGTTTGAAACAATAGAATTTGAATTGAAACATTTTATATTACCA
ATTGAAATATTACAATATAAAATATGGTAAAAGTTGCCCTGTTTGATTTATATTACTGAGTTAT
TACCATGGATTATCTATATAAATTAAATATTTTTAAAAATAAACTCAATAAATAGCTTAAAATA
AGTTATCTAAGAAATGCAGCAAAAGAAATTTTTTTGAGAAGATGTATTTTCCAAAGTATATAGC
AAATAATCCATTTCAATAATCCAGTGCAGAGAATAATCTGTAAAGAACAAGGGCCTTAAGGGCA
ATGATGGGGCATGTTCACATGTTTTGTAACTGTGAAGAGGGCCTTTAAGGACAATGGTGGGGCA
TTTTCACATGTTTTGTAACTGTGAAACATGAATGGACCAGAGTAGCTAACGGTACAAATGATAA
AGAAAATTTGATGAAAGAACTGCATTTGCAGTATGACTTGAGTTTTGAGTATCATAGCTCAACA
TGCCAAAATGTGTTATAATCATATTTGTGACAAATCCTTGATAGATAGAAATTTCATAAATATT
TTCAATTTTACTGTAACAGAAATTTAGAAGCCACAGAAAGGAAATATGACTGTATGCATGCAAG
AAGAATACCAGCTATCCAGCAATCTGTAATTCCAATATCCAAAAACATAAAATGGCAAAGAATG
TGAAGTTATTTCGCAGAAGAATATCACGCAATTGCTAACTCGGCAGTGTGATCTCTTCAATGTA
TGGATGCAATTGTAATTTCCCTCCTCGCTTCCTTGCCAAATTT
Conservation Information
Conserved circRNAs osa_circ_007048
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021