Detail information of BGIOSGA031734_circ_igg.2


General Information
CircRNA Name BGIOSGA031734_circ_igg.2
ID in PlantcircBase osi_circ_008492
Alias Chr10:18884694_18886159(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15793526-15795027  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA031734_circ_igg.1 BGIOSGA031731_circ_igg.1 BGIOSGA031734_circ_g.1 BGIOSGA031734_circ_g.2 BGIOSGA033093_circ_g.1 BGIOSGA033093_circ_g.2 BGIOSGA031731_circ_g.1 BGIOSGA031731_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATCGATGCAGGAATCTGTCTCTCAGCTTGAGCCAAAAGTGCTCTGGCTTCATCTCGTTCTTT
CTTTAATCTAGCTATAACACGGCAGGCAGCATCATGcctcgggagtgtgatctttcaatgtatg
gatgcaantgtaatttccctcctcgcttccttgccaaattttaacagtctgcataatttgcaaa
caactcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCGGGAGTGTGATCTTTCAATGTATGGATGCAANTGTAATTTCCCTCCTCGCTTCCTTGCCA
AATTTTAACAGTCTGCATAATTTGCAAACAACTCAGTGAAGAATAAACAGCACAACCTAATCAT
CAGATAGTCGGACCAGTGACTGCAAACATGGTCAACCTAATCAAGTACTGCAGGAAATGATGCA
ATCAATTTTACTAGCAAAATCAAAACTTGATTATTGCATCAAATTTATGTGACTAATTAATCTA
TCAGAGAATGGCATACCTTATCTGCTGATCCAGTTACAAAGAGCTCATCCCGAGGAACAAATTT
CAAACTGGTTATCTATATATATGAAGGTTCCAATGTTAACATAAATTTTAGAGATAGATTAAAA
ATCAATTGAGTGCATCTAAATCATCAAAATAAAATGAGGGAAAACCTTCTTTGAGTGACCAGTA
AGTGTGCACAAGATTTGACCGGATGACCTGTCAAAAAGCACTGCGTTTGTATCAATGCCACCAG
TTGCAATAATGTCCTGTTAATCCAGAATAAGAACAAAGTAAAATAATTCCTGTTAATCCAGAAT
AAGAACAAAGTAAAATAATAAGTATTTAAATCACCGTTTGCCATCAAATTATCAACATTAAATC
CAAGACGAATCAAACAGATAACAAAATAAAACAAACTACATGTGAACCAAGCTTTTCAGGAGAG
CATCATGTTGCAGGTACAAATAGAAGTATTAGTGATATAATTATTCAATTAATGTGAAATCTTA
CACCTAATTGAACTGAAAAGGATAAGACCACAGAGTATATGATATTCAAAGCAAGGTACACTAA
AAACATAAAAGACAGACCTTTGAAGGATGAATATCCATAGATAAGATGCCTGGTTTGTTTGTCT
TGTGAAGTGGATGACTGGAGATCTGGGTATATCTCTCAATTGCATCAATTGATGCCAAAGTTGG
AGGAACCTGTGAGAAAATGTAGAGAACTGTTATCTCATTTCAAAAGTAAGGTGTAAAGATGGCA
ACAAACACTGAGAAATAATGTCCTGGCGAGATGAGCTAGCATTCTTGAGATAATCTTAACTATT
GGATAAAAACATTAATGCATGTTTTAGACCTTGTTTGTAGCATAACTATGAATACAGATATGTA
CCTGTCGTTTCTTACGATGCGCAGAGAGCATGGTATTACACTCTGTTAGTTCATCAATCATCAC
AGGGTTGATACCAGGACGAATCTTCTTCCCGTCTGGTCCAACTTCATCTTCAAATGCTGAATCC
AACAATGCAGAACTATGAGAAGGCTGAAATTATATGTAGAAATTTACTTCAACAACTTCAAACA
GTCAGAAAGTAGGTACCTCTTTTCCCGTTGGAGACAACAGCTGTAGGTGCAGCTCCTGCCATCG
ATGCAGGAATCTGTCTCTCAGCTTGAGCCAAAAGTGCTCTGGCTTCATCTCGTTCTTTCTTTAA
TCTAGCTATAACACGGCAGGCAGCATCATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021