Detail information of Os10g0466300_circ_g.2


General Information
CircRNA Name Os10g0466300_circ_g.2
ID in PlantcircBase osa_circ_007048
Alias Os_ciR6780
Organism Oryza sativa
Position chr10: 17204864-17206065  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method circseq_cup, find_circ
Parent gene Os10g0466300
Parent gene annotation Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica. (Os10t0466300-01);Similar to Yarrowia lipol
ytica chromosome C of strain CLIB99 of Yarrowia lipolytica. (Os1
0t0466300-02)
Parent gene strand -
Alternative splicing Os10g0466300_circ_g.1 Os10g0466300_circ_g.3 Os10g0466300_circ_g.4
Support reads 2/3
Tissues root/root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0466300-01:3
Os10t0466300-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGAATATCCACGCAATTGCTAACCTCGGCAGTGTGATCTTTCAATGTATGGATGCAATTGTA
ATTTCCCTCCTCGCTTCCTTGCCAAATTTTAACAGTctgaaaaaagaacttgaatgagttgccg
gagtatcacacctgcgtcttcacatcccaaattttgacaacagcttcagtggtccctgtcccca
ggataaga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 336
Transcript exons: 17204864-17206065
CTGCGTCTTCACATCCCAAATTTTGACAACAGCTTCAGTGGTCCCTGTCCCCAGGATAAGACCA
TCTGGGTGGAAAGATGCAGATGTATATCCCTCTTGTCCTGAAGACTCGCCAACCTGTGTGAGGC
AAGATCCTGATGGAATATCGTAGAAGCACCAAGTATTATCCTTGGAAGCAGTCACAAAGTACTT
CTGAGTCGCATGGACTGTAACAGCTTCAACCTCGGCAGTGTGATCTTTCAATGTATGGATGCAA
TTGTAATTTCCCTCCTCGCTTCCTTGCCAAATTTTAACAGTCTGAAAAAAGAACTTGAATGAGT
TGCCGGAGTATCACAC

Genomic sequence CTGAAAAAAGAACTTGAATGAGTTGCCGGAGTATCACACCTGCGTCTTCACATCCCAAATTTTG
ACAACAGCTTCAGTGGTCCCTGTCCCCAGGATAAGACCATCTGGGTGGAAAGATGCAGATGTAT
ATCCCTCTTGTCCTGAAGACTCGCCAACCTGAGTAAAGAAAAGGTATTCATTAACTCATAAACA
TCTTGGGAGCTAACAGACAAAGCATGTATAAGTACATGGATGAATGGGAGCAGGTTACATGAGA
AAGATAATGGAGTAAACCTGTGTGAGGCAAGATCCTGATGGAATATCGTAGAAGCACCAAGTAT
TATCCTTGGAAGCAGTCACAAAGTACTTCTGAGTCGCATGGACTGTAACAGCTTCAACCTGACA
GATTTTTGTAAAACAAATAAGTTTGAAACAATAGAATTTGAATTGAAACATTTTATATTACCAA
TTGAAATATTACAATATAAAATATGGTAAAAGTTGCCCTGTTTGATTTATATTACTGAGTTATT
ACCATGGATTATCTATATAAATTAAATATTTTTAAAAATAAACTCAATAAATAGCTTAAAATAA
GTTATCTAAGAAATGCAGCAAAAGAAATTTTTTTGAGAAGATGTATTTTCCAAAGTATATAGCA
AATAATCCATTTCAATAATCCAGTGCAGAGAATAATCTGTAAAGAACAAGGGCCTTAAGGGCAA
TGATGGGGCATGTTCACATGTTTTGTAACTGTGAAGAGGGCCTTTAAGGACAATGGTGGGGCAT
TTTCACATGTTTTGTAACTGTGAAACATGAATGGACCAGAGTAGCTAACGGTACAAATGATAAA
GAAAATTTGATGAAAGAACTGCATTTGCAGTATGACTTGAGTTTTGAGTATCATAGCTCAACAT
GCCAAAATGTGTTATAATCATATTTGTGACAAATCCTTGATAGATAGAAATTTCATAAATATTT
TCAATTTTACTGTAACAGAAATTTAGAAGCCACAGAAAGGAAATATGACTGTATGCATGCAAGA
AGAATACCAGCTATCCAGCAATCTGTAATTCCAATATCCAAAAACATAAAATGGCAAAGAATGT
GAAGTTATTTTGCAGAAGAATATCCACGCAATTGCTAACCTCGGCAGTGTGATCTTTCAATGTA
TGGATGCAATTGTAATTTCCCTCCTCGCTTCCTTGCCAAATTTTAACAGT
Conservation Information
Conserved circRNAs osi_circ_008497
PMCS 0.251591022
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Ye et al., 2016