Detail information of BGIOSGA031734_circ_igg.1


General Information
CircRNA Name BGIOSGA031734_circ_igg.1
ID in PlantcircBase osi_circ_008491
Alias Chr10:18883850_18886159(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15793496-15795027  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA031734_circ_igg.2 BGIOSGA031731_circ_igg.1 BGIOSGA031734_circ_g.1 BGIOSGA031734_circ_g.2 BGIOSGA033093_circ_g.1 BGIOSGA033093_circ_g.2 BGIOSGA031731_circ_g.1 BGIOSGA031731_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATCGATGCAGGAATCTGTCTCTCAGCTTGAGCCAAAAGTGCTCTGGCTTCATCTCGTTCTTT
CTTTAATCTAGCTATAACACGGCAGGCAGCATCATGtttgcagaagaatatccacgcaattgct
aacctcgggagtgtgatctttcaatgtatggatgcaantgtaatttccctcctcgcttccttgc
caaatttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTGCAGAAGAATATCCACGCAATTGCTAACCTCGGGAGTGTGATCTTTCAATGTATGGATGCA
ANTGTAATTTCCCTCCTCGCTTCCTTGCCAAATTTTAACAGTCTGCATAATTTGCAAACAACTC
AGTGAAGAATAAACAGCACAACCTAATCATCAGATAGTCGGACCAGTGACTGCAAACATGGTCA
ACCTAATCAAGTACTGCAGGAAATGATGCAATCAATTTTACTAGCAAAATCAAAACTTGATTAT
TGCATCAAATTTATGTGACTAATTAATCTATCAGAGAATGGCATACCTTATCTGCTGATCCAGT
TACAAAGAGCTCATCCCGAGGAACAAATTTCAAACTGGTTATCTATATATATGAAGGTTCCAAT
GTTAACATAAATTTTAGAGATAGATTAAAAATCAATTGAGTGCATCTAAATCATCAAAATAAAA
TGAGGGAAAACCTTCTTTGAGTGACCAGTAAGTGTGCACAAGATTTGACCGGATGACCTGTCAA
AAAGCACTGCGTTTGTATCAATGCCACCAGTTGCAATAATGTCCTGTTAATCCAGAATAAGAAC
AAAGTAAAATAATTCCTGTTAATCCAGAATAAGAACAAAGTAAAATAATAAGTATTTAAATCAC
CGTTTGCCATCAAATTATCAACATTAAATCCAAGACGAATCAAACAGATAACAAAATAAAACAA
ACTACATGTGAACCAAGCTTTTCAGGAGAGCATCATGTTGCAGGTACAAATAGAAGTATTAGTG
ATATAATTATTCAATTAATGTGAAATCTTACACCTAATTGAACTGAAAAGGATAAGACCACAGA
GTATATGATATTCAAAGCAAGGTACACTAAAAACATAAAAGACAGACCTTTGAAGGATGAATAT
CCATAGATAAGATGCCTGGTTTGTTTGTCTTGTGAAGTGGATGACTGGAGATCTGGGTATATCT
CTCAATTGCATCAATTGATGCCAAAGTTGGAGGAACCTGTGAGAAAATGTAGAGAACTGTTATC
TCATTTCAAAAGTAAGGTGTAAAGATGGCAACAAACACTGAGAAATAATGTCCTGGCGAGATGA
GCTAGCATTCTTGAGATAATCTTAACTATTGGATAAAAACATTAATGCATGTTTTAGACCTTGT
TTGTAGCATAACTATGAATACAGATATGTACCTGTCGTTTCTTACGATGCGCAGAGAGCATGGT
ATTACACTCTGTTAGTTCATCAATCATCACAGGGTTGATACCAGGACGAATCTTCTTCCCGTCT
GGTCCAACTTCATCTTCAAATGCTGAATCCAACAATGCAGAACTATGAGAAGGCTGAAATTATA
TGTAGAAATTTACTTCAACAACTTCAAACAGTCAGAAAGTAGGTACCTCTTTTCCCGTTGGAGA
CAACAGCTGTAGGTGCAGCTCCTGCCATCGATGCAGGAATCTGTCTCTCAGCTTGAGCCAAAAG
TGCTCTGGCTTCATCTCGTTCTTTCTTTAATCTAGCTATAACACGGCAGGCAGCATCATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021