Detail information of BGIOSGA031734_circ_g.1


General Information
CircRNA Name BGIOSGA031734_circ_g.1
ID in PlantcircBase osi_circ_008493
Alias Chr10:18884965_18885218(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15793797-15794050  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA031734
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031734_circ_igg.1 BGIOSGA031734_circ_igg.2 BGIOSGA031731_circ_igg.1 BGIOSGA031734_circ_g.2 BGIOSGA033093_circ_g.1 BGIOSGA033093_circ_g.2 BGIOSGA031731_circ_g.1 BGIOSGA031731_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA031734-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAACCTTCTTTGAGTGACCAGTAAGTGTGCACAAGATTTGACCGGATGACCTGTCAAAAAGCAC
TGCGTTTGTATCAATGCCACCAGTTGCAATAATGTCccttatctgctgatccagttacaaagag
ctcatcccgaggaacaaatttcaaactggttatctatatatatgaaggttccaatgttaacata
aattttag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTATCTGCTGATCCAGTTACAAAGAGCTCATCCCGAGGAACAAATTTCAAACTGGTTATCTA
TATATATGAAGGTTCCAATGTTAACATAAATTTTAGAGATAGATTAAAAATCAATTGAGTGCAT
CTAAATCATCAAAATAAAATGAGGGAAAACCTTCTTTGAGTGACCAGTAAGTGTGCACAAGATT
TGACCGGATGACCTGTCAAAAAGCACTGCGTTTGTATCAATGCCACCAGTTGCAATAATGTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021