Detail information of AT2G07360_circ_g.6


General Information
CircRNA Name AT2G07360_circ_g.6
ID in PlantcircBase ath_circ_013021
Alias Ath_circ_FC1181, Ath_circ_FC1182
Organism Arabidpsis thaliana
Position chr2: 3051817-3054306  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G07360
Parent gene annotation SH3 domain-containing protein
Parent gene strand -
Alternative splicing AT2G07360_circ_g.5 AT2G07360_circ_g.7 AT2G07360_circ_g.8 AT2G07360_circ_g.9 AT2G07360_circ_g.10 AT2G07360_circ_g.11 AT2G07360_circ_g.12 AT2G07360_circ_g.13 AT2G07360_circ_g.14 AT2G07360_circ_g.15 AT2G07360_circ_g.16
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G07360.2:8
AT2G07360.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTACCTAATGTCATTGCTACTGTATAGGGGTCTCTTGTGGCTAACTCAGATAGAATTTCCAGT
GAATGCCTCACCGCAACAGGATCAGCAAAGAAAACActtccatagcagctgtaagacatcagcg
tcaattttccctggaactttggtggcaaatattctggcaatttcgagaagaataacagccatat
ctggagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCATAGCAGCTGTAAGACATCAGCGTCAATTTTCCCTGGAACTTTGGTGGCAAATATTCTG
GCAATTTCGAGAAGAATAACAGCCATATCTGGAGTTGCCTGTGAAAGAAAAATTAAAAAGAGTT
AACTAGTCAGAAGAAAACAGTTAACATTACTCCTCAATAACAAGTTTTTCTTCAGTTTCAACGC
AATGGATAAGAAAATTGATAGAGTCCATGGTGTAACATGTTTCTGCCAGATAACTCTTGTTACA
AAATCTAAGAAATTAAAGAGATTCCGTACATCAGAGAACTACTAAATACTTATAGGATTGTGGA
CAAACAACAGAGCTGCTTAACTTTGAAACTGTTCGCAACTACACTGGAAAATCAAAAAAGCCAA
GAAAACATCATACTTACCTTAAAGCGGGCATGCAAAGTAAGCAAAACATCATTGACTAGAGCTG
CAGGCCAACCAGGATCTGAAAGCTCCGAGGCAATGATTGATTTTAACTCATCCAATGATTCATC
TGGACTTTGCATCCATATCAATGCTTTGATAACCATTGCCCGGACATACACGCACTCGCATGCT
ACTGTTGTCCGAACCACCTCCATTAATGCAGCTAGCAAACTTGCAATTGTATCACTGCGACCAG
GCCCTGCAGATATGGATGATGTTCTCCGAATTCCTGCAAAAGTCGAACATATACAAAGTAGGAA
CATGTTAGAACATATATAGAATTCCTGCTAAAAATAAGGGTAAACAAGTAACCAAAGAGTGGGA
AAGAAGGTAAAAAGTGATTTGGAACATGTTAAAACTCGAAAGATATAAGGATACCCTACATATT
TAGATAATTCGGTAAAGAAAATCAAAGCAATAGGACAGAAAAACATGTTCCTTTGTTTACGTCT
GAAGAGAAGACTGATATTATACTATTTTTGTAAGGACATCAGAGCATTGAGTTTACTCACATTT
GTAGTTTTGTAACGATTCTAGCATATTGATGCGCCATCAGAGCATAGATGCAATGACTTAACTC
ACATTTGTAGTTGGTGACCTTTCAACGTATAATAAATAATAATACAACAAAATTGAACAAAACT
CTTATAGACCAAAAGCTTGCATACAATTTTATGCTCCATACGAAATTAGAAATATATTTGTGCA
TCTGTCAGACATCTAACAAAATAAAAAAAAAAGATTGTAATTCATATTAAGAGGATACTGACAA
TGTACCTTCTGGATGAGAACTTTCATTGGTCTCAGCATCATCTAGAGCATCAGAAAATGCATTT
ACATGAACGGATTCATCAATGTCCTGTAATCCCATAGCAAACGCTGCTGCTCTACTCTTTCCCA
TCTCTTGCACAACCCTTGCTGCTGCATGAAGTACTGGTCTTGAGAAACTGCGAAATGAGCTCTC
TAACCTGAAAGAACAGGATCAATTTGCGAAAGTTCTTTAACAAGAAACACAACCATAACGATCA
TTACAATCCAAAGCAACATTCTAGTGAGGAAAGGGAATCCATAAGATCTGCAATTCTAAACACA
GTCTTCCACCAAGCTAGGAGTACCTCCTCATTACAAGCTTAATAAGGGGCTGTGGACGCTTGGT
TTTATTAGATTTATCCTTGGAGGACAAGGATGGTGCTTCTGGCAGCTTCAGGATCTCTCTCGTC
AAGCGATACCACCCAGCAGCACGCTCATCCATCCTAAATGATGCAGTACATTTTGGTTATTCAA
TACCTTACAAAGAATGAACTAAGAGAAATCAAAGTCATAGAACTCATGCCTCTCAGTGTTATCG
TGTTTTCCCAGAATGCACAAAATCGCCTCATAGCATACCCTTTCGCTTGGATCTAGGAGTAGCT
GATAGAGAATTGAGTTGAACTGAGACCTAATATCAGGCCTCTCTGTAGGAAGATTGAAAGGAAA
CTAGCAACATGTAAGTTCTCAAAAGATCTCTCCCATATAGCCAGATAAGAAGAAAAAAAAACAG
AGCGAGAACGGGCAGCAGAAAGAGGTTGATAGTACTTACCATCTAATGCCCGAGCTCTAGATAT
TGAGTGGCACAACCTAGCCAGAGAAACTCTAGCAAGAACATCATTCATATGCAGGATATCTTGC
AAAGCCCCTAATTTGGTGTACAGAAGAAAGGTATATCAGCTAACCCAGATCGTGTTCCAAACAC
TTCTTTATAATTAGCACAAATAAACACGAAATAACCAGCAAAAAGATTAACGTCAAGAGATAAA
AGGCCTGGTGAGCATACCTGTTGGAGACGCAAGCTTTTCTGCAGCAAAAAGATCAAGAGACACA
TATCAAGTTTTGAATGAAAAACAGTTATGTCTCTACACACAGAAATAGAATGAAAAAAACAATA
TAAGGGGGAATAGAACAAATTATTTACCTAATGTCATTGCTACTGTATAGGGGTCTCTTGTGGC
TAACTCAGATAGAATTTCCAGTGAATGCCTCACCGCAACAGGATCAGCAAAGAAAACA
Conservation Information
Conserved circRNAs NA
PMCS 0.141928055
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a