Detail information of AT2G07360_circ_g.14


General Information
CircRNA Name AT2G07360_circ_g.14
ID in PlantcircBase ath_circ_013029
Alias 2:3054469-3055105
Organism Arabidpsis thaliana
Position chr2: 3054469-3055105  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G07360
Parent gene annotation SH3 domain-containing protein
Parent gene strand -
Alternative splicing AT2G07360_circ_g.5 AT2G07360_circ_g.6 AT2G07360_circ_g.7 AT2G07360_circ_g.8 AT2G07360_circ_g.9 AT2G07360_circ_g.10 AT2G07360_circ_g.11 AT2G07360_circ_g.12 AT2G07360_circ_g.13 AT2G07360_circ_g.15 AT2G07360_circ_g.16
Support reads 1/1
Tissues leaf;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G07360.1:2
AT2G07360.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTTCCTGGAGGAACCTAAGAGTTTAGAAAGATACCTCTTTATCACCCCCTTTTGTCCCAAA
TACACCTTTCTTTCGTTTATGCGGAACATCACCAACccctgagctgcacggtgcagaaaaagtg
gatttcctggatcaagagggagtcttctcagtgcactcatagcagcgtattgcaagttacttcg
cataatcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 164
Transcript exons: 3054469-3054569,3055043-3055105
CCCTGAGCTGCACGGTGCAGAAAAAGTGGATTTCCTGGATCAAGAGGGAGTCTTCTCAGTGCAC
TCATAGCAGCGTATTGCAAGTTACTTCGCATAATCGACTCTTTATCACCCCCTTTTGTCCCAAA
TACACCTTTCTTTCGTTTATGCGGAACATCACCAAC

Genomic sequence CCCTGAGCTGCACGGTGCAGAAAAAGTGGATTTCCTGGATCAAGAGGGAGTCTTCTCAGTGCAC
TCATAGCAGCGTATTGCAAGTTACTTCGCATAATCGACTAACAAAAACGAGATAAAACGCTCAA
GTTAATAACAAAGTTTAGTGTTGACCTTCTGCAATCCAGAAGCTGTATACTCAAGTGAGGAAGA
ATTCTATTCGTCTGCCTACATATCTAGAAGCTAAGTTATCAAAGTTGTTCCTTTGGCTTATTGA
TAATCTGATATACGAATAGAATTGTAATGTTTTAAAAAAATGGTTTTATTAATTCAAATAACAT
TTAACTCGGGCCTTAAAAATCTGATAGCTAATAGCCAGAGTCTCCAGATGTGCAAACTCATATC
ATTATAGAGCAACTATGATACACTGCCTAATGCATGCAGTCATCAACAAGAATTTTGAGAAATT
TCTACCCTACAGCAGGCAAAGAACATGCAGAGCATTGTAAAAAAGAAAATTATAAAGTGCAGGA
ACATGACTAGTATATAAGCCTTAAGTCTTTTCCTGGAGGAACCTAAGAGTTTAGAAAGATACCT
CTTTATCACCCCCTTTTGTCCCAAATACACCTTTCTTTCGTTTATGCGGAACATCACCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.19415772
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020