Detail information of AT2G07360_circ_g.13


General Information
CircRNA Name AT2G07360_circ_g.13
ID in PlantcircBase ath_circ_013028
Alias 2:3054212-3055105
Organism Arabidpsis thaliana
Position chr2: 3054212-3055105  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G07360
Parent gene annotation SH3 domain-containing protein
Parent gene strand -
Alternative splicing AT2G07360_circ_g.5 AT2G07360_circ_g.6 AT2G07360_circ_g.7 AT2G07360_circ_g.8 AT2G07360_circ_g.9 AT2G07360_circ_g.10 AT2G07360_circ_g.11 AT2G07360_circ_g.12 AT2G07360_circ_g.14 AT2G07360_circ_g.15 AT2G07360_circ_g.16
Support reads 1/2
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G07360.2:3
AT2G07360.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTTCCTGGAGGAACCTAAGAGTTTAGAAAGATACCTCTTTATCACCCCCTTTTGTCCCAAA
TACACCTTTCTTTCGTTTATGCGGAACATCACCAACctaatgtcattgctactgtataggggtc
tcttgtggctaactcagatagaatttccagtgaatgcctcaccgcaacaggatcagcaaagaaa
acactgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAATGTCATTGCTACTGTATAGGGGTCTCTTGTGGCTAACTCAGATAGAATTTCCAGTGAATG
CCTCACCGCAACAGGATCAGCAAAGAAAACACTGCAACATAAAAGTGTGAATACGAGAATAACT
GTCCAATATACTGCATAATTAGGAATAGACCAAAAATTCAATTGCTCTTGTGAAACCTACATCA
CTATACTTAAATCCAATACTCTATACTTAAAAAGATAGTAGAAAGAACCAAAAAAAAAGTCTTA
CCCCTGAGCTGCACGGTGCAGAAAAAGTGGATTTCCTGGATCAAGAGGGAGTCTTCTCAGTGCA
CTCATAGCAGCGTATTGCAAGTTACTTCGCATAATCGACTAACAAAAACGAGATAAAACGCTCA
AGTTAATAACAAAGTTTAGTGTTGACCTTCTGCAATCCAGAAGCTGTATACTCAAGTGAGGAAG
AATTCTATTCGTCTGCCTACATATCTAGAAGCTAAGTTATCAAAGTTGTTCCTTTGGCTTATTG
ATAATCTGATATACGAATAGAATTGTAATGTTTTAAAAAAATGGTTTTATTAATTCAAATAACA
TTTAACTCGGGCCTTAAAAATCTGATAGCTAATAGCCAGAGTCTCCAGATGTGCAAACTCATAT
CATTATAGAGCAACTATGATACACTGCCTAATGCATGCAGTCATCAACAAGAATTTTGAGAAAT
TTCTACCCTACAGCAGGCAAAGAACATGCAGAGCATTGTAAAAAAGAAAATTATAAAGTGCAGG
AACATGACTAGTATATAAGCCTTAAGTCTTTTCCTGGAGGAACCTAAGAGTTTAGAAAGATACC
TCTTTATCACCCCCTTTTGTCCCAAATACACCTTTCTTTCGTTTATGCGGAACATCACCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.125289663
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020