Detail information of AT2G07360_circ_g.9


General Information
CircRNA Name AT2G07360_circ_g.9
ID in PlantcircBase ath_circ_013024
Alias NA
Organism Arabidpsis thaliana
Position chr2: 3053376-3053935  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G07360
Parent gene annotation SH3 domain-containing protein
Parent gene strand -
Alternative splicing AT2G07360_circ_g.5 AT2G07360_circ_g.6 AT2G07360_circ_g.7 AT2G07360_circ_g.8 AT2G07360_circ_g.10 AT2G07360_circ_g.11 AT2G07360_circ_g.12 AT2G07360_circ_g.13 AT2G07360_circ_g.14 AT2G07360_circ_g.15 AT2G07360_circ_g.16
Support reads 2
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G07360.2:3
AT2G07360.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACCATCTAATGCCCGAGCTCTAGATATTGAGTGGCACAACCTAGCCAGAGAAACTCTAGCAA
GAACATCATTCATATGCAGGATATCTTGCAAAGCCCctcctcattacaagcttaataaggggct
gtggacgcttggttttattagatttatccttggaggacaaggatggtgcttctggcagcttcag
gatctctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCTCATTACAAGCTTAATAAGGGGCTGTGGACGCTTGGTTTTATTAGATTTATCCTTGGAGG
ACAAGGATGGTGCTTCTGGCAGCTTCAGGATCTCTCTCGTCAAGCGATACCACCCAGCAGCACG
CTCATCCATCCTAAATGATGCAGTACATTTTGGTTATTCAATACCTTACAAAGAATGAACTAAG
AGAAATCAAAGTCATAGAACTCATGCCTCTCAGTGTTATCGTGTTTTCCCAGAATGCACAAAAT
CGCCTCATAGCATACCCTTTCGCTTGGATCTAGGAGTAGCTGATAGAGAATTGAGTTGAACTGA
GACCTAATATCAGGCCTCTCTGTAGGAAGATTGAAAGGAAACTAGCAACATGTAAGTTCTCAAA
AGATCTCTCCCATATAGCCAGATAAGAAGAAAAAAAAACAGAGCGAGAACGGGCAGCAGAAAGA
GGTTGATAGTACTTACCATCTAATGCCCGAGCTCTAGATATTGAGTGGCACAACCTAGCCAGAG
AAACTCTAGCAAGAACATCATTCATATGCAGGATATCTTGCAAAGCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.243203257
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017