Detail information of AT2G07360_circ_g.8


General Information
CircRNA Name AT2G07360_circ_g.8
ID in PlantcircBase ath_circ_013023
Alias 2:3053038-3054094
Organism Arabidpsis thaliana
Position chr2: 3053038-3054094  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G07360
Parent gene annotation SH3 domain-containing protein
Parent gene strand -
Alternative splicing AT2G07360_circ_g.5 AT2G07360_circ_g.6 AT2G07360_circ_g.7 AT2G07360_circ_g.9 AT2G07360_circ_g.10 AT2G07360_circ_g.11 AT2G07360_circ_g.12 AT2G07360_circ_g.13 AT2G07360_circ_g.14 AT2G07360_circ_g.15 AT2G07360_circ_g.16
Support reads 3
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G07360.1:5
AT2G07360.2:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTATAATTAGCACAAATAAACACGAAATAACCAGCAAAAAGATTAACGTCAAGAGATAAAAG
GCCTGGTGAGCATACCTGTTGGAGACGCAAGCTTTTcttctggatgagaactttcattggtctc
agcatcatctagagcatcagaaaatgcatttacatgaacggattcatcaatgtcctgtaatccc
atagcaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTGGATGAGAACTTTCATTGGTCTCAGCATCATCTAGAGCATCAGAAAATGCATTTACATG
AACGGATTCATCAATGTCCTGTAATCCCATAGCAAACGCTGCTGCTCTACTCTTTCCCATCTCT
TGCACAACCCTTGCTGCTGCATGAAGTACTGGTCTTGAGAAACTGCGAAATGAGCTCTCTAACC
TGAAAGAACAGGATCAATTTGCGAAAGTTCTTTAACAAGAAACACAACCATAACGATCATTACA
ATCCAAAGCAACATTCTAGTGAGGAAAGGGAATCCATAAGATCTGCAATTCTAAACACAGTCTT
CCACCAAGCTAGGAGTACCTCCTCATTACAAGCTTAATAAGGGGCTGTGGACGCTTGGTTTTAT
TAGATTTATCCTTGGAGGACAAGGATGGTGCTTCTGGCAGCTTCAGGATCTCTCTCGTCAAGCG
ATACCACCCAGCAGCACGCTCATCCATCCTAAATGATGCAGTACATTTTGGTTATTCAATACCT
TACAAAGAATGAACTAAGAGAAATCAAAGTCATAGAACTCATGCCTCTCAGTGTTATCGTGTTT
TCCCAGAATGCACAAAATCGCCTCATAGCATACCCTTTCGCTTGGATCTAGGAGTAGCTGATAG
AGAATTGAGTTGAACTGAGACCTAATATCAGGCCTCTCTGTAGGAAGATTGAAAGGAAACTAGC
AACATGTAAGTTCTCAAAAGATCTCTCCCATATAGCCAGATAAGAAGAAAAAAAAACAGAGCGA
GAACGGGCAGCAGAAAGAGGTTGATAGTACTTACCATCTAATGCCCGAGCTCTAGATATTGAGT
GGCACAACCTAGCCAGAGAAACTCTAGCAAGAACATCATTCATATGCAGGATATCTTGCAAAGC
CCCTAATTTGGTGTACAGAAGAAAGGTATATCAGCTAACCCAGATCGTGTTCCAAACACTTCTT
TATAATTAGCACAAATAAACACGAAATAACCAGCAAAAAGATTAACGTCAAGAGATAAAAGGCC
TGGTGAGCATACCTGTTGGAGACGCAAGCTTTT
Conservation Information
Conserved circRNAs NA
PMCS 0.17641006
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020