Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024327_circ_g.7 |
ID in PlantcircBase | zma_circ_010208 |
Alias | zma_circ_0000155 |
Organism | Zea mays |
Position | chr10: 64846885-64861808 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d024327 |
Parent gene annotation |
RING/FYVE/PHD zinc finger superfamily protein |
Parent gene strand | - |
Alternative splicing | Zm00001d024327_circ_g.6 Zm00001d024327_circ_g.8 Zm00001d024327_circ_g.9 Zm00001d024327_circ_g.10 Zm00001d024327_circ_g.11 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d024327_T002:6 Zm00001d024327_T001:7 Zm00001d024327_T003:1 |
Conservation Information | |
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Conserved circRNAs | osi_circ_018355 osa_circ_036380 |
PMCS | 0.127443782 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
64861758-64846973(+) 64846910-64861757(-) 64861766-64846887(-) |
Potential amino acid sequence |
MSIATSSRAPTPPFSRARGGYSSPPSSLTSSFFPSLLTRPFKDMSDP*(+) MGVMSILHVLLRKEVWVLLNLLLWT*(-) MDMKARGMYVCRTLSYKGANFDILESLLEERMMDPTKREVGKLRATFNEVLWKMVEDYDLQAII SKQADEWKKTKVDMNMYRKAAALWVELRVELLSAIEYYAEDKVNSAQIWRLYWASHQRFFRHMC MSAKVPAVVRLAKEALAEEKCVVIGLQSTGEARTEEAVAKYGIELEDFVSGPRELLLKLVEDNY PLPPKPDCFEQGEEKVQEFQHKRHYGSDMSLKGRVSKLGKKEDVSEDGGDEYPPRALEKGGVGA LELVAMDMKARGMYVCRTLSYKGANFDILESLLEERMMDPTKREVGKLRATFNEVLWKMVEDYD LQAIISKQADEWKKTKVDMNMYRKAAALWVELRVELLSAIEYYAEDKVNSAQIWRLYWASHQRF FRHMCMSAKVPAVVRLAKEALAEEKCVVIGLQSTGEARTEEAVAKYGIELEDFVSGPRELLLKL VEDNYPLPPKPDCFEQGEEKVQEFQHKRHYGSDMSLKGRVSKLGKKEDVSEDGGDEYPPRALEK GGVGALELVAMDMKARGMYVCRTLSYKGANFDILESLLEERMMDPTKREVGKLRATFNEVLWKM VEDYDLQAIISKQADEWKKTKVDMNMYRKAAALWVELRVELLSAIEYYAEDKVNSAQIWRLYWA SHQRFFRHMCMSAKVPAVVRLAKEALAEEKCVVIGLQSTGEARTEEAVAKYGIELEDFVSGPRE LLLKLVEDNYPLPPKPDCFEQGEEKVQEFQHKRHYGSDMSLKGRVSKLGKKEDVSEDGGDEYPP RALEKGGVGALELVAMDMKARGMYVCRTLSYKGANFDILESLLEERMMDPTKREVGKLRATFNE VLWKMVEDYDLQAIISKQADEWKKTKVDMNMYRKAAALWVELRVELLSAIEYYAEDKVNSAQIW RLYWASHQRFFRHMCMSAKVPAVVRLAKEALAEEKCVVIGLQSTGEARTEEAVAKYGIELEDFV SGPRELLLKLVEDNYPLPPKPDCFEQGEEKVQEFQHKRHYGSDMSLKGRVSKLGKKEDVSEDGG DEYPP(-) |
Sponge-miRNAs | zma-miR319a-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |