Detail information of Os03g0114300_circ_g.6


General Information
CircRNA Name Os03g0114300_circ_g.6
ID in PlantcircBase osa_circ_017589
Alias Os_ciR9170
Organism Oryza sativa
Position chr3: 802920-805883  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os03g0114300
Parent gene annotation Serine/threonine protein kinase domain containing protein. (Os03
t0114300-01);Similar to ATP binding protein. (Os03t0114300-02)
Parent gene strand +
Alternative splicing Os03g0108800_circ_ag.1 Os03g0109300_circ_g.1 Os03g0109300_circ_g.2 Os03g0109300_circ_g.3 Os03g0109300_circ_g.4 Os03g0109400_circ_g.1 Os03g0109400_circ_g.2 Os03g0109400_circ_g.3 Os03g0109400_circ_g.4 Os03g0109400_circ_g.5 Os03g0109400_circ_g.6 Os03g0109600_circ_g.1 Os03g0109600_circ_g.2 Os03g0109900_circ_g.1 Os03g0109900_circ_g.2 Os03g0109900_circ_g.3 Os03g0109900_circ_g.4 Os03g0109900_circ_g.5 Os03g0109900_circ_g.6 Os03g0110400_circ_g.1 Os03g0110400_circ_g.2 Os03g0110400_circ_g.3 Os03g0110400_circ_g.4 Os03g0110400_circ_g.5 Os03g0110500_circ_g.1 Os03g0110900_circ_g.1 Os03g0111100_circ_g.1 Os03g0111100_circ_g.2 Os03g0111100_circ_g.3 Os03g0111100_circ_g.4 Os03g0111100_circ_g.5 Os03g0111100_circ_g.6 Os03g0111100_circ_g.7 Os03g0111100_circ_g.8 Os03g0111100_circ_g.9 Os03g0111100_circ_g.10 Os03g0111100_circ_g.11 Os03g0111200_circ_g.1 Os03g0111200_circ_g.2 Os03g0111200_circ_g.3 Os03g0111400_circ_g.1 Os03g0111400_circ_g.2 Os03g0111500_circ_g.1 Os03g0111500_circ_g.2 Os03g0111500_circ_g.3 Os03g0111600_circ_g.1 Os03g0111600_circ_g.2 Os03g0111700_circ_g.1 Os03g0111700_circ_g.2 Os03g0111800_circ_g.1 Os03g0112101_circ_g.1 Os03g0112101_circ_g.2 Os03g0112101_circ_igg.1 Os03g0112101_circ_ig.1 Os03g0112101_circ_ig.2 Os03g0112101_circ_ig.3 Os03g0112101_circ_ig.4 Os03g0112101_circ_ig.5 Os03g0112101_circ_ig.6 Os03g0112101_circ_ig.7 Os03g0112101_circ_ig.8 Os03g0112400_circ_g.1 Os03g0112400_circ_igg.1 EPlOSAG00000048437_circ_ig.1 EPlOSAG00000048437_circ_ig.2 Os03g0112600_circ_ig.1 Os03g0112700_circ_g.1 Os03g0112700_circ_g.2 Os03g0112700_circ_g.3 Os03g0112700_circ_g.4 Os03g0112700_circ_g.5 Os03g0112700_circ_g.6 Os03g0112700_circ_g.7 Os03g0112800_circ_g.1 Os03g0112800_circ_g.2 Os03g0113500_circ_g.1 Os03g0113500_circ_g.2 Os03g0113500_circ_g.3 Os03g0113500_circ_g.4 Os03g0113500_circ_g.5 Os03g0113700_circ_g.1 Os03g0113800_circ_g.1 Os03g0113800_circ_g.2 Os03g0113800_circ_g.3 Os03g0113800_circ_g.4 Os03g0113800_circ_g.5 Os03g0113800_circ_g.6 Os03g0113800_circ_g.7 EPlOSAG00000003330_circ_ig.1 Os03g0114000_circ_g.1 Os03g0114300_circ_g.1 Os03g0114300_circ_g.2 Os03g0114300_circ_g.3 Os03g0114300_circ_g.4 Os03g0114300_circ_g.5 Os03g0114300_circ_g.7 Os03g0114300_circ_g.8 Os03g0114300_circ_g.9 Os03g0114300_circ_g.10 Os03g0114300_circ_g.11 Os03g0115100_circ_g.1 Os03g0115400_circ_g.1 Os03g0115400_circ_g.2 Os03g0115400_circ_ig.1 Os03g0115700_circ_g.1 Os03g0116000_circ_g.1 Os03g0116000_circ_g.2 Os03g0116300_circ_g.1 Os03g0116300_circ_g.2 Os03g0116300_circ_g.3 Os03g0116300_circ_g.4 Os03g0116300_circ_g.5 Os03g0116300_circ_g.6 Os03g0116400_circ_g.1 Os03g0116400_circ_g.2 Os03g0116700_circ_g.1 Os03g0116700_circ_g.2 Os03g0116900_circ_igg.1 Os03g0117100_circ_g.1 Os03g0117100_circ_g.2 Os03g0117100_circ_g.3 Os03g0117100_circ_g.4 Os03g0117800_circ_g.1 Os03g0117800_circ_g.2 Os03g0118400_circ_g.1
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0114300-01:7
Os03t0114300-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAGTTGTACAAAAAGAACCACAAATCTCAGTGGTCCTCTTGCACTCCCTACTCGTGCTTCTG
CAAATAGTCTGTCTGCTCCTATTCGGTCTTCTGGAGttgttatcagtctttcaaggaaatggtt
gcaatgtgcctggtcaaagatcaaacaaagaggccaacggctgaaaagttactaaagcactcat
ttttcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTTATCAGTCTTTCAAGGAAATGGTTGCAATGTGCCTGGTCAAAGATCAAACAAAGAGGCCA
ACGGCTGAAAAGTTACTAAAGCACTCATTTTTCAAGAACGCAAAACCTCCAGAGCTGACTGTTA
AGAGTATTTTAACTGATTTGCCCCCTCTGTGGGATCGTGTAAAAGCGCTCCAGGTTTTGCTAGT
TTACTTTCCTTTTGTTTTTACTTAATGATGGAAACATTATGCCTTAATTAATTCCTGTTATCCT
GTGCATTTGCAGCTAAAAGATGCAGCACAATTAGCTTTGAAGAAAATGCCTTCTTCTGAACAGG
AGGCACTTTCTATGGTTTGTGATTTTGATGTTTCTTTTAAGTTCCACTTTGTTTTGTGCTGTTC
TTTCATTTGAGTTCATGAAAATATGCTAGCTAGTTTATTTTACCCACAAACTTCTGAAATAGGC
TTTATGGTGGTATTATATATATTCATTTTACAGGCAAATCTTCTGCTTTGTTTTTAATTTATTA
TCACTGACCATACCAGTCTTAATGATTTTGGTCAGTAGATGCAGCTTAAAAACAAATTTGTAGA
GGGCCAGGGTCAATTTGCAGTAACACAAATCCCAGCCCTTGCAAAATGAAGTTAGAACTGTGGT
ATTACTTTCATGCATGGATATGTTATTGGTTGAACAAGGACTAGCACAGAATGATTTAAGATCC
CAGCATATTAGACTATGTTTGATGCTTTTTTAATTTAAAAATTAAAATGACGTTAAATTTTTTT
ATCACTTGTATGCTATGGTGTCACTATATTTATGCTAAGAATATGATGTCTAAGACACATTTCA
GCCAACGCAATGATTTGTACGAGAGATCACTTTAGCTAGTCCACCTTACAGGCAGTAGCTAACT
TCTATTTTTCTTTCACTTGTTAGCTCCATGGACGTAATACCCTAATGATTTTTGCACTTCTGTT
CCACATACAAACTAATATTCATGATAAACATAGTTTGGTTTATTATAGATATGTTTGCACTTTT
ATTTCACTTACATGATAGTTTCCTTATCATCTGAATTATCTAATAGAGTGAGTACCAAAGAGGC
GTAAGCGCATGGAACTTCGATATTGAGGATTTAAAGGCTCAAGCATCATTGGTAAAACAACCAG
TTTCTTTAGTTCTATATCGAAATGCTACATTGCTCTCTGATTCATTCTGTTACATTGCTAAGAT
GTAAAATGACTGTAATTTAGTCTTATAAGTGAGATTTCCAACCTTTTTGCAGATTCATGATGAT
GATCCACCTGAAATAAAGGAAGATGTTGACAATGATAGAATAAATGAAGCTGATAAGGTTAGCT
GCTCTCGACTTGATTTTGTTTCAGACGTAGGCTTGCGTTCTGGTAAGACAGGGTAATAACTGTA
GCTAGATGGGATCATGAGAAAACTTTATCTAGTGTGTCAAATAGAAGAAGTATCACACATGTTT
AACTTCAAAGCACAGAAAAGAGCTTGCCGTTTATCAAATTTGAAAAGTCAGGGTCATTTGTAAT
GCCACAAATGCTTCTGTTTAAATCTGGAAGATGCTTATGTTCTGATCCTGTTATTGTTTCTCGC
TAATTCTGAGTGCTGCAGAAACATTTGCACACCATGTTGTCATAGCTTATTGATTTCTTGTAAG
TAAGACAAAATTATGTACCAAATATGATTCTGTTTCAAGTCATTTATGATTGCTCTGTTTGCAG
GAGCCGTTTTCTGGCAATCATTTTGGACAACCAAAAATTTTGAGTGGAAAGCACTTCAGGTTGA
ATCAGTATGCAATATTTTTTTGTGGCAATGTTTTCTTTAAAAGATATAGATGTTCTATATTGTT
CCCTAGCTTGTGATTCTCAACATCACCAATCGAAGTATATAGGATTCAAGTTTTATTTTATGTG
GTGTAGGGTGAAATTTTGGTCTTATAAATTAAAACAAGCGAAAGATTCAGTGAGCCTTGATGCA
TGCTTTTCTGTGTTACTGGTAGTGTGTTCATAATGTTCCACTCTTTTGTTACATTTCAGTGAAC
AAACTTGTGTCACTGCAGTAAGTCCAGGGGGGAATATGCATGAGACAAGCAGAGGATTGGTTTC
TGAACCTGGTGATGCTGATAGTGAAAGGAAAGTTGATGGATATAGAAAACAAGGGTCAGAAAAC
GAATCGTTACCCTCTACATCAAAACATGATTCTGAAGGACAAAACAGTAGTAGTGAAGTTAAAC
AAAAAGAAAGGACTTGCTCTGGCCCAATTCTGTGTTCTGGTGTACATAATAAATCAATAACTGA
AAGCAGTCGCATTTTTGATAGGTAAGCCTTTCACTGTTTTTTTTTCCTATTCCAATTTTAATAT
TACTTGGCTGCTACAATGTTGTGCATACCAATAATTTAATGCATGTTTTTTTTGGACTTTCCTG
TTTGAAATATTACATATGAATATGCCTCAGAAATGAAACGGTACAGTTTAAGATGCTTTTTTCC
CCCTTAAAATCGGCTAATATTTGAGCTTTCAAGTGTCGTTAGTTCTTAAATGTTTGACTTAGGT
CATGCAATAATTGATTTTATAGAAACAAATTAGTAGTTATTCTTCTTGAATTTGTATACCTGAG
TTTCCTGTGAGTACTGTTATGAAGTTAGGAGGTTTCATAATTTTTTTGCTGAAACAAATTGCTC
AAAAAGGCATTTGCATACCTGAGTTTCCTGTGAGTACTGTTATGAAGTTAGGAGGTTTCATAAT
TTTTTTGCTGAAACAAATTGCTCAAAAAGGCATTTGCATTTTAAAAGCACTTTTGGTTATTGTT
ATTCCTTGCTGCAGGGAAGCGGCAGTTAAGTTGGCATCTGATAAACAAAAGAGTTGTACAAAAA
GAACCACAAATCTCAGTGGTCCTCTTGCACTCCCTACTCGTGCTTCTGCAAATAGTCTGTCTGC
TCCTATTCGGTCTTCTGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.127790483
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015