Detail information of Os10g0359500_circ_g.6


General Information
CircRNA Name Os10g0359500_circ_g.6
ID in PlantcircBase osa_circ_006583
Alias NA
Organism Oryza sativa
Position chr10: 11038069-11039143  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0359500
Parent gene annotation No apical meristem (NAM) protein domain containing protein. (Os1
0t0359500-01)
Parent gene strand -
Alternative splicing Os10g0359500_circ_g.1 Os10g0359500_circ_g.2 Os10g0359500_circ_g.3 Os10g0359500_circ_g.4 Os10g0359500_circ_g.5
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAATGACTGAATTATGAAAGTCAGACCACAAATTCCACATATGCCATAATCTTGTTGGAAAAT
ACCATTAATTATCCTGTGTATAGATTGGATGCAAACagattatcttttattgaggtttaacaag
ataataagccattaagcaccattgtggttttcattgtaggaatagcttaactctaggatatagc
accgctgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGATTATCTTTTATTGAGGTTTAACAAGATAATAAGCCATTAAGCACCATTGTGGTTTTCATTG
TAGGAATAGCTTAACTCTAGGATATAGCACCGCTGGTCACAGTGAACTGTGGACTTGTGCTATG
CAAAAAAGAGTAAACTTTAGTTCTGATACCTCAGAAAATTTGCAATCAAATCTTTATTGAAACC
AGGCACCAGTTACCAATTTAAAACATGCAAGAATGTTATTAATATATGATTCCAGTAGATTTAT
GTACTATGTGTTATGATGTGGGATACTGAAGAGTGCAGAGACACATATCAACAACTTAGGTGCA
CATTTTAGTGTGGAAAGTGAACTGAAGCCCCAAAATCTAAGCACATGATCTGCTTGTATAGTGA
CTCCAACTAAAAACAAAAGTTGATAATTAATTGCATATACTGAATTCTGACATCTTCGAAAACT
TAATTTTCACTTGGAAACAATGATTTTGCATAATTGGAGAATCTAGTAAGGATGGCAGAGTAAG
TTCTAGCCAAGCAACACAGTGAACAGAATTTAATCATCAAAGAGTGTACTTCATACTTTTCCAG
CAAAAGCAGGCAAGCAATTGGTGCACAAGCTAAGAAAAATGAAAAACAAAATGCTCAATTTAAT
GTGAAGTGCCAAACTATTTCTCATATAACATCCTGCTATAGTTTATGAGCACTTCATGCTGGCA
ATTTGTGCCATAATCAATGGGGCAGAAGTATGTGTTCCTGCACTTAACATGGCACTTTCATCAG
AGCTCAAAATATTTCTTTCTGGCATTGCATAAAATATTGTTTATGCCTTTCAACCCTAAATAGT
TATCAATTCTATGCAGAATTCATTTTCTTTAGTTGTCTATTGAGAATTAAAATGTTGCAATACT
GCTCAACCATACAATACAATGCTGTAAAGTAAGTATATAACAAATCAAAAAGGACAAAACAAAG
AAGCCTTCAGGGTCCATAATGACTGAATTATGAAAGTCAGACCACAAATTCCACATATGCCATA
ATCTTGTTGGAAAATACCATTAATTATCCTGTGTATAGATTGGATGCAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.102409907
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017