Detail information of Os10g0359500_circ_g.1


General Information
CircRNA Name Os10g0359500_circ_g.1
ID in PlantcircBase osa_circ_006578
Alias Os_ciR3594
Organism Oryza sativa
Position chr10: 11035807-11039316  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os10g0359500
Parent gene annotation No apical meristem (NAM) protein domain containing protein. (Os1
0t0359500-01)
Parent gene strand -
Alternative splicing Os10g0359500_circ_g.2 Os10g0359500_circ_g.3 Os10g0359500_circ_g.4 Os10g0359500_circ_g.5 Os10g0359500_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0359500-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCTCTGCTAAGAATCGGACAAGCTCCTCATCGCTCCAAAATTTGCTTATGCTGGTGTTAAGT
AATGCTAACCCAGGAACTTTAGAAGACATGATTGTCctggtgataatcagaaactactgccatc
ctcatttcactgaactaacacaggtatcagtgaatatctgaccctatcaatcaagaatggaatc
aaggtagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGTGATAATCAGAAACTACTGCCATCCTCATTTCACTGAACTAACACAGGTATCAGTGAATA
TCTGACCCTATCAATCAAGAATGGAATCAAGGTAGCTCACTTCAGTTTGACAGAATCATCAAGG
TCATGATATCTTCACACTATGAACAAAACAAAAATGTAACTTTCCACAGTTTGTAGTATTGTTG
GTCATTGTTGCTTCAAAACTTGCAGTCTTCTTTGACTATGTTCTATCAGAAGATCTGGCATAAA
TCTGTTGAGGCGACCAGTCCGTATCAAAATAGCATGGCGTAATGTCATGCTTCCTGTACAGAGT
ATAGAAATGCTATGCAATGGACTATAATGATCCACAACACCAGTACTTTCCTAATTTTCCAATT
TTTTTGGTAGATCGCTCTCTCTGTCTCTGGGGAGACTTGCTGTTGCTGGTACCCTGAGAGCTAC
TGGAACTACTAGAAAGGCTTCGTTTCACATGACTTGGGAAACAGGAAGTTGTAGGACTGTGCTG
TGGATGCTCCTCACTTGAGTGTTCGTCTACTTTATCATTTTTCACTGACTTTTGCGGTGAATCT
CCAGCTATGGTGGCATGGTTATCGAGATTGTTAACAAACCCTGCACGCACAGAGATGCCAACTT
CAGTATAAATCCTACTAACAAATTATTGTATAAACAAGATAAATAAAATAAGTTAATGAGCTGA
AAAGTAATCATCTAACTCTCTAGACAAGAGTAACTTACATGTTACTCGTATGCGAAACAATACT
GTTGAACAAGCATGCTAATCAAGAACTTCACCAGTAGCAATAAGAAACAAACAAATAAACATTG
CATATCAATATGAGCAAGTGCAGCTGTAAAATTAGCATTATCAACAGTTCTCGATTTCTAGTAT
TTGTGTGAAGTATATTGCATTTGGGCTTTTTACTTGCAAATTTTCATGGTTACAAACTTTGAAA
TGGTTGTTTGCATTGTTACACTTACTTTTCTAGAACAAACACAAAGATTTGTAGCGTCCTCTAG
TTTTGGAACTAGCAACAGAAGGGATAAGTTACCTTGTTCAGGTGGACTGATAACCACGCAATCT
GATTTACTAGCTGCAGCTACGCTGAACTTGCTGTCTGTATGTTCTTCATCAGCTGCGTTATGGT
CATTCCTAATCTCCCTCAGAAATGCATCAGAATCGAAGTACTCTTCAGAAATCATAGTGCGTTG
ACTTGAGTATTCCGAAGTTGATGCGGACGAATCTGAGTTTAAGAAGTCATTCAATTCTATGTAG
CCCTCCCTAGAAGGGGCATGATTAACAGATTGGTCATCAGCAGCACTAGTTTTTTGCCCGTCCA
GTCCTTTGCTGGAAGAGACATCTTGCTCGTTTACAGATACAGCCTGGCATATGTAGATTGGATA
TTCATTAGTATTATCACACATCTAAATATTCACAGTTTGTAATGCAGAAGAAAGCAATAAGTAG
TAAATGATGATCGGATAGGAGCATGCTCTCACAAACAACAGATTTTGTATGGTTATGAAGGAGA
AAACCTTAAATACTTCAAAATCAAAATAAAAAAGTGAATTACAATGACAGGATTGCTGGAGTAT
TTCTTAATTTTACATGACAGACAATCATGGATCAAGGTATACTTTACACTAAAATGAGAAAAAA
TATGTGCAAAACTAAAAGATCCAGGGTATTGCTAAGGATGCCTTACATAATAAAGAAAACAATA
CAAACCTGGTTGCTCCATGCAGCATTTTGCTCTTCTAGTTCAGCAAGATATTGAAGGTAAAATT
CCTTGCGTTCATTAGGAACATTTGCATTCAGACATATCTGCTTATCTCCAGCATTTAATATGTC
GTCTCCCTGAAAGAATATTGTACACAAATTCTTGTAGTCCTGTCAAAAATACAAAAGATATCAA
TCAACAACCCTGGAAAAAAAGCTTATATGCTATAGAAAAAAAAATGATATCAATCAACCACCAT
GGGTTACCTGTGGTAGATTAGCTTCGTCATTCTGTTCAATCAGATATTCATCCATCACCCACCC
AGTTCTCTTACCAGATGGTGCTTCGCCTTCATAATGGTCCAGAGAAACTTTCATACCCACAATA
ACAGTACTTGTCGGTATTCTAACAGTGCCAACAACTTTCCAGTATCCGGTTTTTGACTTTATAA
TAGCATTTTCTCCATTCTTAGGGGATTGTGGATCATCTGAAAAATTCATGTACCATATGTCCTC
TGCAAGAAAAGTTATCTCTGTCAGATTATCTTTTATTGAGGTTTAACAAGATAATAAGCCATTA
AGCACCATTGTGGTTTTCATTGTAGGAATAGCTTAACTCTAGGATATAGCACCGCTGGTCACAG
TGAACTGTGGACTTGTGCTATGCAAAAAAGAGTAAACTTTAGTTCTGATACCTCAGAAAATTTG
CAATCAAATCTTTATTGAAACCAGGCACCAGTTACCAATTTAAAACATGCAAGAATGTTATTAA
TATATGATTCCAGTAGATTTATGTACTATGTGTTATGATGTGGGATACTGAAGAGTGCAGAGAC
ACATATCAACAACTTAGGTGCACATTTTAGTGTGGAAAGTGAACTGAAGCCCCAAAATCTAAGC
ACATGATCTGCTTGTATAGTGACTCCAACTAAAAACAAAAGTTGATAATTAATTGCATATACTG
AATTCTGACATCTTCGAAAACTTAATTTTCACTTGGAAACAATGATTTTGCATAATTGGAGAAT
CTAGTAAGGATGGCAGAGTAAGTTCTAGCCAAGCAACACAGTGAACAGAATTTAATCATCAAAG
AGTGTACTTCATACTTTTCCAGCAAAAGCAGGCAAGCAATTGGTGCACAAGCTAAGAAAAATGA
AAAACAAAATGCTCAATTTAATGTGAAGTGCCAAACTATTTCTCATATAACATCCTGCTATAGT
TTATGAGCACTTCATGCTGGCAATTTGTGCCATAATCAATGGGGCAGAAGTATGTGTTCCTGCA
CTTAACATGGCACTTTCATCAGAGCTCAAAATATTTCTTTCTGGCATTGCATAAAATATTGTTT
ATGCCTTTCAACCCTAAATAGTTATCAATTCTATGCAGAATTCATTTTCTTTAGTTGTCTATTG
AGAATTAAAATGTTGCAATACTGCTCAACCATACAATACAATGCTGTAAAGTAAGTATATAACA
AATCAAAAAGGACAAAACAAAGAAGCCTTCAGGGTCCATAATGACTGAATTATGAAAGTCAGAC
CACAAATTCCACATATGCCATAATCTTGTTGGAAAATACCATTAATTATCCTGTGTATAGATTG
GATGCAAACCTGAGTTACGTGGATCAATGAGAGAAATGTTCATTCCCACAAATACATTCTCTGG
CAGAGAGTGTGCTTCTTTCCTCTCTGCTAAGAATCGGACAAGCTCCTCATCGCTCCAAAATTTG
CTTATGCTGGTGTTAAGTAATGCTAACCCAGGAACTTTAGAAGACATGATTGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.092245613
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015