Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0359500_circ_g.2 |
ID in PlantcircBase | osa_circ_006579 |
Alias | Os_ciR4553 |
Organism | Oryza sativa |
Position | chr10: 11036863-11038045 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os10g0359500 |
Parent gene annotation |
No apical meristem (NAM) protein domain containing protein. (Os1 0t0359500-01) |
Parent gene strand | - |
Alternative splicing | Os10g0359500_circ_g.1 Os10g0359500_circ_g.3 Os10g0359500_circ_g.4 Os10g0359500_circ_g.5 Os10g0359500_circ_g.6 |
Support reads | 4/2 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0359500-01:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.109062813 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11038031-11037020(+) 11038033-11036865(-) |
Potential amino acid sequence |
MYHMSSCSGGLITTQSDLLAAATLNLLSVCSSSAALWSFLISLRNASESKYSSEIIVR*(+) MNFSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPTSTVIVGMKVSLDHYEGEAPSGKRTGWVMD EYLIEQNDEANLPQDYKNLCTIFFQGDDILNAGDKQICLNANVPNERKEFYLQYLAELEEQNAA WSNQAVSVNEQDVSSSKGLDGQKTSAADDQSVNHAPSREGYIELNDFLNSDSSASTSEYSSQRT MISEEYFDSDAFLREIRNDHNAADEEHTDSKFSVAAASKSDCVVISPPEQEDIWYMNFSDDPQS PKNGENAIIKSKTGYWKVVGTVRIPTSTVIVGMKVSLDHYEGEAPSGKRTGWVMDEYLIEQNDE ANLPQDYKNLCTIFFQGDDILNAGDKQICLNANVPNERKEFYLQYLAELEEQNAAWSNQAVSVN EQDVSSSKGLDGQKTSAADDQSVNHAPSREGYIELNDFLNSDSSASTSEYSSQRTMISEEYFDS DAFLREIRNDHNAADEEHTDSKFSVAAASKSDCVVISPPEQEDIWYMNFSDDPQSPKNGENAII KSKTGYWKVVGTVRIPTSTVIVGMKVSLDHYEGEAPSGKRTGWVMDEYLIEQNDEANLPQDYKN LCTIFFQGDDILNAGDKQICLNANVPNERKEFYLQYLAELEEQNAAWSNQAVSVNEQDVSSSKG LDGQKTSAADDQSVNHAPSREGYIELNDFLNSDSSASTSEYSSQRTMISEEYFDSDAFLREIRN DHNAADEEHTDSKFSVAAASKSDCVVISPPEQEDIWYMNFSDDPQSPKNGENAIIKSKTGYWKV VGTVRIPTSTVIVGMKVSLDHYEGEAPSGKRTGWVMDEYLIEQNDEANLPQDYKNLCTIFFQGD DILNAGDKQICLNANVPNERKEFYLQYLAELEEQNAAWSNQAVSVNEQDVSSSKGLDGQKTSAA DDQSVNHAPSREGYIELNDFLNSDSSASTSEYSSQRTMISEEYFDSDAFLREIRNDHNAADEEH TDSKFSVAAASKSDCVVISPPEQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |