Detail information of Os10g0359500_circ_g.2


General Information
CircRNA Name Os10g0359500_circ_g.2
ID in PlantcircBase osa_circ_006579
Alias Os_ciR4553
Organism Oryza sativa
Position chr10: 11036863-11038045  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os10g0359500
Parent gene annotation No apical meristem (NAM) protein domain containing protein. (Os1
0t0359500-01)
Parent gene strand -
Alternative splicing Os10g0359500_circ_g.1 Os10g0359500_circ_g.3 Os10g0359500_circ_g.4 Os10g0359500_circ_g.5 Os10g0359500_circ_g.6
Support reads 4/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0359500-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAACAACTTTCCAGTATCCGGTTTTTGACTTTATAATAGCATTTTCTCCATTCTTAGGGGATT
GTGGATCATCTGAAAAATTCATGTACCATATGTCCTcttgttcaggtggactgataaccacgca
atctgatttactagctgcagctacgctgaacttgctgtctgtatgttcttcatcagctgcgtta
tggtcatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTTCAGGTGGACTGATAACCACGCAATCTGATTTACTAGCTGCAGCTACGCTGAACTTGCT
GTCTGTATGTTCTTCATCAGCTGCGTTATGGTCATTCCTAATCTCCCTCAGAAATGCATCAGAA
TCGAAGTACTCTTCAGAAATCATAGTGCGTTGACTTGAGTATTCCGAAGTTGATGCGGACGAAT
CTGAGTTTAAGAAGTCATTCAATTCTATGTAGCCCTCCCTAGAAGGGGCATGATTAACAGATTG
GTCATCAGCAGCACTAGTTTTTTGCCCGTCCAGTCCTTTGCTGGAAGAGACATCTTGCTCGTTT
ACAGATACAGCCTGGCATATGTAGATTGGATATTCATTAGTATTATCACACATCTAAATATTCA
CAGTTTGTAATGCAGAAGAAAGCAATAAGTAGTAAATGATGATCGGATAGGAGCATGCTCTCAC
AAACAACAGATTTTGTATGGTTATGAAGGAGAAAACCTTAAATACTTCAAAATCAAAATAAAAA
AGTGAATTACAATGACAGGATTGCTGGAGTATTTCTTAATTTTACATGACAGACAATCATGGAT
CAAGGTATACTTTACACTAAAATGAGAAAAAATATGTGCAAAACTAAAAGATCCAGGGTATTGC
TAAGGATGCCTTACATAATAAAGAAAACAATACAAACCTGGTTGCTCCATGCAGCATTTTGCTC
TTCTAGTTCAGCAAGATATTGAAGGTAAAATTCCTTGCGTTCATTAGGAACATTTGCATTCAGA
CATATCTGCTTATCTCCAGCATTTAATATGTCGTCTCCCTGAAAGAATATTGTACACAAATTCT
TGTAGTCCTGTCAAAAATACAAAAGATATCAATCAACAACCCTGGAAAAAAAGCTTATATGCTA
TAGAAAAAAAAATGATATCAATCAACCACCATGGGTTACCTGTGGTAGATTAGCTTCGTCATTC
TGTTCAATCAGATATTCATCCATCACCCACCCAGTTCTCTTACCAGATGGTGCTTCGCCTTCAT
AATGGTCCAGAGAAACTTTCATACCCACAATAACAGTACTTGTCGGTATTCTAACAGTGCCAAC
AACTTTCCAGTATCCGGTTTTTGACTTTATAATAGCATTTTCTCCATTCTTAGGGGATTGTGGA
TCATCTGAAAAATTCATGTACCATATGTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.109062813
Functional Information
Coding potential Y
Potential coding position 11038031-11037020(+)
11038033-11036865(-)
Potential amino acid sequence MYHMSSCSGGLITTQSDLLAAATLNLLSVCSSSAALWSFLISLRNASESKYSSEIIVR*(+)
MNFSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPTSTVIVGMKVSLDHYEGEAPSGKRTGWVMD
EYLIEQNDEANLPQDYKNLCTIFFQGDDILNAGDKQICLNANVPNERKEFYLQYLAELEEQNAA
WSNQAVSVNEQDVSSSKGLDGQKTSAADDQSVNHAPSREGYIELNDFLNSDSSASTSEYSSQRT
MISEEYFDSDAFLREIRNDHNAADEEHTDSKFSVAAASKSDCVVISPPEQEDIWYMNFSDDPQS
PKNGENAIIKSKTGYWKVVGTVRIPTSTVIVGMKVSLDHYEGEAPSGKRTGWVMDEYLIEQNDE
ANLPQDYKNLCTIFFQGDDILNAGDKQICLNANVPNERKEFYLQYLAELEEQNAAWSNQAVSVN
EQDVSSSKGLDGQKTSAADDQSVNHAPSREGYIELNDFLNSDSSASTSEYSSQRTMISEEYFDS
DAFLREIRNDHNAADEEHTDSKFSVAAASKSDCVVISPPEQEDIWYMNFSDDPQSPKNGENAII
KSKTGYWKVVGTVRIPTSTVIVGMKVSLDHYEGEAPSGKRTGWVMDEYLIEQNDEANLPQDYKN
LCTIFFQGDDILNAGDKQICLNANVPNERKEFYLQYLAELEEQNAAWSNQAVSVNEQDVSSSKG
LDGQKTSAADDQSVNHAPSREGYIELNDFLNSDSSASTSEYSSQRTMISEEYFDSDAFLREIRN
DHNAADEEHTDSKFSVAAASKSDCVVISPPEQEDIWYMNFSDDPQSPKNGENAIIKSKTGYWKV
VGTVRIPTSTVIVGMKVSLDHYEGEAPSGKRTGWVMDEYLIEQNDEANLPQDYKNLCTIFFQGD
DILNAGDKQICLNANVPNERKEFYLQYLAELEEQNAAWSNQAVSVNEQDVSSSKGLDGQKTSAA
DDQSVNHAPSREGYIELNDFLNSDSSASTSEYSSQRTMISEEYFDSDAFLREIRNDHNAADEEH
TDSKFSVAAASKSDCVVISPPEQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017