Detail information of Os10g0359500_circ_g.4


General Information
CircRNA Name Os10g0359500_circ_g.4
ID in PlantcircBase osa_circ_006581
Alias NA
Organism Oryza sativa
Position chr10: 11037221-11037539  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0359500
Parent gene annotation No apical meristem (NAM) protein domain containing protein. (Os1
0t0359500-01)
Parent gene strand -
Alternative splicing Os10g0359500_circ_g.1 Os10g0359500_circ_g.2 Os10g0359500_circ_g.3 Os10g0359500_circ_g.5 Os10g0359500_circ_g.6
Support reads 1
Tissues shoot, root
Exon boundary   No-No
Splicing signals   CT-TT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGTATACTTTACACTAAAATGAGAAAAAATATGTGCAAAACTAAAAGATCCAGGGTATTGCT
AAGGATGCCTTACATAATAAAGAAAACAATACAAACagtattatcacacatctaaatattcaca
gtttgtaatgcagaagaaagcaataagtagtaaatgatgatcggataggagcatgctctcacaa
acaacaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTATTATCACACATCTAAATATTCACAGTTTGTAATGCAGAAGAAAGCAATAAGTAGTAAATG
ATGATCGGATAGGAGCATGCTCTCACAAACAACAGATTTTGTATGGTTATGAAGGAGAAAACCT
TAAATACTTCAAAATCAAAATAAAAAAGTGAATTACAATGACAGGATTGCTGGAGTATTTCTTA
ATTTTACATGACAGACAATCATGGATCAAGGTATACTTTACACTAAAATGAGAAAAAATATGTG
CAAAACTAAAAGATCCAGGGTATTGCTAAGGATGCCTTACATAATAAAGAAAACAATACAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.146290387
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017