Detail information of Os10g0359500_circ_g.3


General Information
CircRNA Name Os10g0359500_circ_g.3
ID in PlantcircBase osa_circ_006580
Alias NA
Organism Oryza sativa
Position chr10: 11036863-11039316  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os10g0359500
Parent gene annotation No apical meristem (NAM) protein domain containing protein. (Os1
0t0359500-01)
Parent gene strand -
Alternative splicing Os10g0359500_circ_g.1 Os10g0359500_circ_g.2 Os10g0359500_circ_g.4 Os10g0359500_circ_g.5 Os10g0359500_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0359500-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCTCTGCTAAGAATCGGACAAGCTCCTCATCGCTCCAAAATTTGCTTATGCTGGTGTTAAGT
AATGCTAACCCAGGAACTTTAGAAGACATGATTGTCcttgttcaggtggactgataaccacgca
atctgatttactagctgcagctacgctgaacttgctgtctgtatgttcttcatcagctgcgtta
tggtcatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTTCAGGTGGACTGATAACCACGCAATCTGATTTACTAGCTGCAGCTACGCTGAACTTGCT
GTCTGTATGTTCTTCATCAGCTGCGTTATGGTCATTCCTAATCTCCCTCAGAAATGCATCAGAA
TCGAAGTACTCTTCAGAAATCATAGTGCGTTGACTTGAGTATTCCGAAGTTGATGCGGACGAAT
CTGAGTTTAAGAAGTCATTCAATTCTATGTAGCCCTCCCTAGAAGGGGCATGATTAACAGATTG
GTCATCAGCAGCACTAGTTTTTTGCCCGTCCAGTCCTTTGCTGGAAGAGACATCTTGCTCGTTT
ACAGATACAGCCTGGCATATGTAGATTGGATATTCATTAGTATTATCACACATCTAAATATTCA
CAGTTTGTAATGCAGAAGAAAGCAATAAGTAGTAAATGATGATCGGATAGGAGCATGCTCTCAC
AAACAACAGATTTTGTATGGTTATGAAGGAGAAAACCTTAAATACTTCAAAATCAAAATAAAAA
AGTGAATTACAATGACAGGATTGCTGGAGTATTTCTTAATTTTACATGACAGACAATCATGGAT
CAAGGTATACTTTACACTAAAATGAGAAAAAATATGTGCAAAACTAAAAGATCCAGGGTATTGC
TAAGGATGCCTTACATAATAAAGAAAACAATACAAACCTGGTTGCTCCATGCAGCATTTTGCTC
TTCTAGTTCAGCAAGATATTGAAGGTAAAATTCCTTGCGTTCATTAGGAACATTTGCATTCAGA
CATATCTGCTTATCTCCAGCATTTAATATGTCGTCTCCCTGAAAGAATATTGTACACAAATTCT
TGTAGTCCTGTCAAAAATACAAAAGATATCAATCAACAACCCTGGAAAAAAAGCTTATATGCTA
TAGAAAAAAAAATGATATCAATCAACCACCATGGGTTACCTGTGGTAGATTAGCTTCGTCATTC
TGTTCAATCAGATATTCATCCATCACCCACCCAGTTCTCTTACCAGATGGTGCTTCGCCTTCAT
AATGGTCCAGAGAAACTTTCATACCCACAATAACAGTACTTGTCGGTATTCTAACAGTGCCAAC
AACTTTCCAGTATCCGGTTTTTGACTTTATAATAGCATTTTCTCCATTCTTAGGGGATTGTGGA
TCATCTGAAAAATTCATGTACCATATGTCCTCTGCAAGAAAAGTTATCTCTGTCAGATTATCTT
TTATTGAGGTTTAACAAGATAATAAGCCATTAAGCACCATTGTGGTTTTCATTGTAGGAATAGC
TTAACTCTAGGATATAGCACCGCTGGTCACAGTGAACTGTGGACTTGTGCTATGCAAAAAAGAG
TAAACTTTAGTTCTGATACCTCAGAAAATTTGCAATCAAATCTTTATTGAAACCAGGCACCAGT
TACCAATTTAAAACATGCAAGAATGTTATTAATATATGATTCCAGTAGATTTATGTACTATGTG
TTATGATGTGGGATACTGAAGAGTGCAGAGACACATATCAACAACTTAGGTGCACATTTTAGTG
TGGAAAGTGAACTGAAGCCCCAAAATCTAAGCACATGATCTGCTTGTATAGTGACTCCAACTAA
AAACAAAAGTTGATAATTAATTGCATATACTGAATTCTGACATCTTCGAAAACTTAATTTTCAC
TTGGAAACAATGATTTTGCATAATTGGAGAATCTAGTAAGGATGGCAGAGTAAGTTCTAGCCAA
GCAACACAGTGAACAGAATTTAATCATCAAAGAGTGTACTTCATACTTTTCCAGCAAAAGCAGG
CAAGCAATTGGTGCACAAGCTAAGAAAAATGAAAAACAAAATGCTCAATTTAATGTGAAGTGCC
AAACTATTTCTCATATAACATCCTGCTATAGTTTATGAGCACTTCATGCTGGCAATTTGTGCCA
TAATCAATGGGGCAGAAGTATGTGTTCCTGCACTTAACATGGCACTTTCATCAGAGCTCAAAAT
ATTTCTTTCTGGCATTGCATAAAATATTGTTTATGCCTTTCAACCCTAAATAGTTATCAATTCT
ATGCAGAATTCATTTTCTTTAGTTGTCTATTGAGAATTAAAATGTTGCAATACTGCTCAACCAT
ACAATACAATGCTGTAAAGTAAGTATATAACAAATCAAAAAGGACAAAACAAAGAAGCCTTCAG
GGTCCATAATGACTGAATTATGAAAGTCAGACCACAAATTCCACATATGCCATAATCTTGTTGG
AAAATACCATTAATTATCCTGTGTATAGATTGGATGCAAACCTGAGTTACGTGGATCAATGAGA
GAAATGTTCATTCCCACAAATACATTCTCTGGCAGAGAGTGTGCTTCTTTCCTCTCTGCTAAGA
ATCGGACAAGCTCCTCATCGCTCCAAAATTTGCTTATGCTGGTGTTAAGTAATGCTAACCCAGG
AACTTTAGAAGACATGATTGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.200073204
Functional Information
Coding potential Y
Potential coding position 11038031-11036877(+)
11039311-11039287(-)
Potential amino acid sequence MYHMSSELRGSMREMFIPTNTFSGRECASFLSAKNRTSSSSLQNLLMLVLSNANPGTLEDMIVL
VQVD*(+)
MSSKVPGLALLNTSISKFWSDEELVRFLAERKEAHSLPENVFVGMNISLIDPRNSEDIWYMNFS
DDPQSPKNGENAIIKSKTGYWKVVGTVRIPTSTVIVGMKVSLDHYEGEAPSGKRTGWVMDEYLI
EQNDEANLPQDYKNLCTIFFQGDDILNAGDKQICLNANVPNERKEFYLQYLAELEEQNAAWSNQ
AVSVNEQDVSSSKGLDGQKTSAADDQSVNHAPSREGYIELNDFLNSDSSASTSEYSSQRTMISE
EYFDSDAFLREIRNDHNAADEEHTDSKFSVAAASKSDCVVISPPEQGQSCLLKFLG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017