Detail information of AT3G07160_circ_g.10


General Information
CircRNA Name AT3G07160_circ_g.10
ID in PlantcircBase ath_circ_020245
Alias At_ciR5259
Organism Arabidpsis thaliana
Position chr3: 2268701-2273175  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT3G07160
Parent gene annotation Glucan synthase-like 10
Parent gene strand -
Alternative splicing AT3G07160_circ_g.4 AT3G07160_circ_g.5 AT3G07160_circ_g.6 AT3G07160_circ_g.7 AT3G07160_circ_g.8 AT3G07160_circ_g.9 AT3G07160_circ_g.11 AT3G07160_circ_g.12 AT3G07160_circ_g.13 AT3G07160_circ_g.14 AT3G07160_circ_g.15 AT3G07160_circ_g.16 AT3G07160_circ_g.17 AT3G07160_circ_g.18 AT3G07160_circ_g.19 AT3G07160_circ_g.20 AT3G07160_circ_g.21 AT3G07160_circ_g.22
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G07160.2:16
AT3G07160.3:16
AT3G07160.1:16
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACCACACTTACCTCCCCCAAACGATCTCTTGCACCAAGCAAGAACCCCAAAAAAGCAGAGAA
AATGGTGTAGAATATATGGATGTCTAACAGGTATATcttccagtaaagacatgttccctaactc
caagaatagtaggtggtcgaattccatggtcccggtcaaattcctccaaaagatttctcatctt
taaggctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCAGTAAAGACATGTTCCCTAACTCCAAGAATAGTAGGTGGTCGAATTCCATGGTCCCGGT
CAAATTCCTCCAAAAGATTTCTCATCTTTAAGGCTTCTTCAAAATAATTATCCTAACAAATAAC
GAAATGAAAAAAATTAGAACATGATGCTAGAGGTTGGGGATGCATTTAGCTCTTGTCTCAAACG
TAAAGGATGTAAAGCACACATGTACACATGACAGAAGATTCAGGTACAATCATTCATGTAATGA
GATGTCCCACTCCAAACTCAAATGTAATCAGTAAGTGCTTTTCAGTTAAGAACCATTCCTACTC
CACATGTGTTTAATTTTGAGCTTCAAACATAGAAACAAAGCTAGGAACCACTCTTCCTCAGTGA
AACCCATATTGAATGTACTTGGTAAAATTATGTATCTAGATTTGGCAAAATTTTCACTTTATTC
TTTTGGAAAGCGAAATTTGTTAAATCTAATTTGAATGTCGCATGAGCTCAAATTATGCTCAAGT
AAAAGTCTACATAGTGGCACCTAAGGTTTTCTAGTACCAAGAGGAATTCTAGTCAATTAATCCA
AATTACATAGATTGGACAAGGTATTGGATGAAACTCGGCTAACCAAATCAATCTACAGCCACAT
GTCTCCACTAGACATGTGCATAAGCTATGAAGCACTGTTTTTCTCACGCCCTATTTTTAATTCT
TAAGATCTAAATTTGAAACTATTATTCTTACTATTTTTTATAAAGCCTATGCATTTCAAATTTA
CTTGATTGAACTTCCCCAGAAACTTAATCATTACAAACCCACACAAGATCGCGAAAGACGACAT
TTGAAACAAAGAGATGCCAAGAGACGAAAGAAGAATTGCATACTAACCTGATTCATATCAATAG
TTTGGATAGCATTTCCGCGAGTAAACACAATGGCGTGGTTTTGATTCTCAGGTTTGCCTTCGCC
AAGTTTCGGGTCCCCAGGCAACTTTATGGAGTAAATTTCCTGCATAAATAAAGAACAAAGTGGT
CATTCCATATAACAAAATAGAAGGACCAAAGAGGAAAAGGGGGAGGAAACGCAAAATTCCATTT
ACAGCGTAAGCACAGTTTATCGATCAATTAAAGTATGATCAAGTGTTTCAAACATTAGTGAAAC
AAGAACACTAGTTTACGTCTGGGTTCACAGATAATAACAGTTTACCTTATCCTTTCCACTGATG
TCGGCCTTCACAAGTTTTGAATAATATTCCGTATGAGATTTACCCTCTTTTGGACTATCAACAA
CATCAATATAAGCAATGCGAAGGGCTTCATTTCTGACAATAGAATGAAAAAGATTAGCTTAATA
ATACAATAACAGAATGATAACAGACGCACTAGACCTGAGATAGAAAAGTCCATCTCCTTAACCA
ACAGTGGAATCCAGAAAAGTCTTTTCTTACCTTTGCATTAGCAATGCAATGTCAACAGCTTCAG
GTTTTTGATCTTCTTTTTGTCTTCCATATATCTGGCATGTGACAACATATGTGAACTTGAGATC
TGCTTGGGCCCTTGCTTCTGGAGATAACTCAAATCCTTCAGCGTCTGTAGCGTCATTGCCAGCT
TTTCTTTCCAGATAAGACTGAAGCATGAGGGCTTTCCTATAATACATCATCCCACGAACTGCAG
ATAGAATGCCAGATAACACGTAAAGAAAAACACTGAAAATATATGCGAGGGAATAGCAGAAAAG
TAAGGTCTCTTTATTGATAGAGATATCATTATTACTTGCAATGTGAGATCATGAAGTGAACAGT
GATCCCCAAGAAAAGAGGTGTAGATATGCGTTTATTGTACCTGTTCTAGCTAACGTTTGTCCAC
GGTAAGAGGCCCAAAATCGAAGTTCAAGTATGTCTCTTTCATTATCTAGATCGCCTTCTAACGC
ATTTTCGTCTCGTCCTATGCGTGCAAGAAAATTTTTCCACTCATCTGCAACACATCAAATATCA
ATAAGAAACATTTAGGATCTACTATAACGGTAATACAATTAAGTACAGAAAACATAACGAAGCG
TAAGTAAGAAACATAAAAAACTAGGCAAGAGTCGCTAATCTTTAAAAGGAATTGTATACCTGGA
TATATTTTCTGAAGATAAAACAGTATTGATATTCCATCCTCATTTCTCTTGGTGAGTTCAGCCA
TGCTGTATAGCACAACCTCGGAATAGTATGGAGTGAAGACACTGAAAAATAATCCAAAAGAAGA
TAGTAACTTGTGAAGAGCTTGCTTAGATAATATGACGAAAGTATGGAGAAAGAAATACCTGAAG
GATAACATCTTGCGGACAGACTTAGGTGGTGGCACATCCATGAAAAGAGAATTGGTGAAGAATT
GAAGTCTACGTCTGGCCTCAAGATTTCTAGGAACATGCGCTGCAGAATCTTTGATAGTAAATAG
AGAGTACAATCTTTTGACGAGTGCTTTCTGCAAATCAAAGACAATTATCAGACTGACGAAAAAG
AATGAGTGCACTAATATGCTTGACAACAAGAATCATCATTATACCAGCTCAGGGTCTTTAGGCC
ATTTCAACTTTGTAAAAAGCCGACCTTCATTCCAGGCTTGAGTTAACAGGTTCCACGTTTCATA
ATGACCCCTACACAGAGCAACATAATTTTAAAACATATCAAACAAGGAAAAGAAAAGAGCGATT
GGATTCTTGCATTAAAAAACAAATCATCAACTTTGTATGCACCTCATATTAAAAGTCAATATGT
CAAGCCGCATAACATCGTAGAGATCCTGAAGTGCTTTGATAGCCCCTTTTGCATGCTCCGGTGT
TTCATTTTCTTTCTGTCCATGCAAATTTAAAATCAAATATAAAGTATCATGCTAAGAAAATAAC
AAAATAAAACTCCGTCCAATTGATAGAGGGTGAAGAAAATATGGCACCCTTCTCCCACTAATAG
GTAAGGACGCCTTAAATTCACAATAATCTAACTTCCAGTATCATCAAAATTACTACTATTATCA
TTAAGAGCCGTTAAATAAAGGCATTTCTGACAATAATTAGCAGTGGCAATGCGAATACCAGGAT
TCCCAAGAGTGCAGTCACTCTCGTGATAACAAGGGAGAGCTTGTTCAACTGAAAATCATGATGT
ATATTTCTCTCCTTTAAGCTGGTTTGGATATCTTCATAGATTCTCTCCACCCTAAAAAAATTAA
CGATAAATATCATCTTTTTATCCAGCAACAACGTTGTAAGTGATTTTAGGGCCGAAAATCCATA
CCACAGCCTTCCTTCGGCTTCCAGAGTTTCTGTTAGGACAAGTTTGAGAGTGTGATAGACTTCC
TCAACAGCATACTTCATATAGTCATCCCTTTCAATCCTCTCCAGAATCTCCTCTTGCGAATTAC
TCTCAGCTGCAATCTCTTTGGCCAATAATATCTACAGTAGATTATCAAATAATAATTGTCACTC
ATACGTAACCTCATATGTAAATTTTATGGAAAGCAATGAGGCTAGCGAGATATCACAATAAAAC
GTTGAATTTAATACAAACGCAGGTAAAGTAACAAACTCACCTTGCTGGAAAGAAGAAAAAGTGG
CCACTGAACCAATTCGAGCCTACCAGAATTCTTGGGCATCAGGAGCAATTCCATCTCACTACAA
AAATGATTCCAGATGAGAAAAATAAGTAAAAACAAAAATATATAATAGCAGAAGCTTAGAGAAT
TATGCACACAGTATAGTTACTGTAGAGCATAAAGCACTTACAAATCAGTGATGTAGTCTTCCTC
TCGTAAACTTTTTATTATTTGGTTCCAAAATGGAGCAAAGTGTGCTGCATCTACTTTGTTCTTC
TTATCCACAGTCTTTGAGTTGATAATCACATGCAAATATGAACAACAATAGTGAGAAGAAATAA
CATGCCAGTCCCCTTGACTCAGCGGGGACAACATTTTCACGTACATTATTTAGGAAATTAGTGA
TTTATATAATGTAAAACAAGCCAACAGCTACATAAAAGAGAAGATGAAAAAAACATCACTACCT
GATGAGAAGTATCAGACGTCCTGCACATGATATTGAATCATAGGCAAAAGAAATGAAAACGAGA
AAATGTTAATATTTAACAAAGATAAATGGAGGAATACAGGAAAAATGATGTTCGTGGATAGGAG
ATGGAAAGGAACCTAACCGATTGGTAAGAGGAACATGAAGAGCCCTCATAAAAGCCCCTGGAAA
CTCCTCAAAGAGTTTATGAATCGCTTCCAAAGATCTTATCTGTGCAAATTGCAAGGAAAGCATC
GGAAACGTAAGGACCTAATCTCTTATGAATAGTGTTGTAACAGTTTTAAATATCTGAATTTTGA
CATTCGTAAGACAGAGAGGAGTGTAACCACACTTACCTCCCCCAAACGATCTCTTGCACCAAGC
AAGAACCCCAAAAAAGCAGAGAAAATGGTGTAGAATATATGGATGTCTAACAGGTATAT
Conservation Information
Conserved circRNAs NA
PMCS 0.11747863
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR4239
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015