Detail information of Os04g0304200_circ_g.3


General Information
CircRNA Name Os04g0304200_circ_g.3
ID in PlantcircBase osa_circ_023355
Alias NA
Organism Oryza sativa
Position chr4: 13642299-13643001  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0304200
Parent gene annotation Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Pho
totropin). (Os04t0304200-01)
Parent gene strand -
Alternative splicing Os04g0304200_circ_g.2 Os04g0304200_circ_g.4 Os04g0304200_circ_g.5 Os04g0304200_circ_g.6 Os04g0304200_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0304200-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAATGTAAGGTCTTTGTGCAGTATGTTATAAAATGTCTTTTTCCTGTTCTTTCCTCGGAAAG
GTGTACGCCCATACAGCATCTCATACAATAGAATTCcttaaaatgtatcaagatttaggggaac
atcttcatcaggcttcgcttttggttgagtttccttgccaattagtttcagaggaacatctagt
tcaggggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAAAATGTATCAAGATTTAGGGGAACATCTTCATCAGGCTTCGCTTTTGGTTGAGTTTCCTT
GCCAATTAGTTTCAGAGGAACATCTAGTTCAGGGGGGCTCTGCACATATAGTTATTTAGATAAT
CAGTGATGCACTAAACAAACTATCTTTGTCGAAATGTCTTGATGCTCGAAACATTCAAAGTACC
ATGCAACGTATGAGTGGCCAATTGATGTCTTGAAAAAAGGAATGTTGCTTGATGTCATTTGCAC
CAGCATTTGAACCTATACGATTTGAAGGATCTCTCTGAAGTAATCCATGGATTAATTGCTTTGC
TGCAAGACTAACCTGGAGAATCATAGTGATATTAATAAATGAGAACAAATGAAAACTAAAATAC
AATAACGAAGTGTAAGATAGGCATAAACATTTTCTTATCTAACACATGCTAACACATACCCTTA
ACATGATATCTTACAGGCTTGCTGGACAGATTGTAAATTGGACTCAACCTTTGTAGTTGCAAAT
TGAATACAGTATGCAAAAAATATTGGCCTGCATGACAGGAAACTTCACTGGCCATTTCTCTAAA
AAAGAAGTTCTTACCGGAATGCTACTGGGAAATGTAAGGTCTTTGTGCAGTATGTTATAAAATG
TCTTTTTCCTGTTCTTTCCTCGGAAAGGTGTACGCCCATACAGCATCTCATACAATAGAATTC
Conservation Information
Conserved circRNAs osi_circ_005372*
PMCS 0.266279256
Functional Information
Coding potential Y
Potential coding position 13642937-13642500(+)
Potential amino acid sequence MSFSCSFLGKVYAHTASHTIEFLKMYQDLGEHLHQASLLVEFPCQLVSEEHLVQGGSCNV*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017