Detail information of BGIOSGA015373_circ_igg.3


General Information
CircRNA Name BGIOSGA015373_circ_igg.3
ID in PlantcircBase osi_circ_005372
Alias 4:11699838|11700540
Organism Oryza sativa ssp. indica
Position chr4: 11699838-11700540  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015373_circ_igg.1 BGIOSGA015373_circ_igg.2 BGIOSGA015373_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAATGTAAGGTCTTTGTGCAGTATGTTATAAAATGTCTTTTTCCTGTTCTTTCCTCGGAAAG
GTGTCCGCCCATACAGCATCTCATACAATAGAATTCcttaaaatgtatcaagatttaggggaac
atcttcgtcaggcttcgcttttggttgagtttccttgccaattagtttcagaggaacatctagt
tcaggggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAAAATGTATCAAGATTTAGGGGAACATCTTCGTCAGGCTTCGCTTTTGGTTGAGTTTCCTT
GCCAATTAGTTTCAGAGGAACATCTAGTTCAGGGGGGCTCTGCACATATAGTTATTTAGATAAT
CAGTGATGCACTAAACAAACTATCTTTGTCGAAATGTCTTGATGCTCGAAACATTCAAAGTACC
ATGCAACGTATGAGTGGCCAATTGATGTCTTGAAAAAAGGAATGTTGCTTGATGTCATTTGCAC
CAGCATTTGAACCTATACGATTTGAAGGATCTCTCTGAAGTAATCCATGGATTAATTGCTTTGC
TGCAAGACTAACCTGGAGAATCATAGTGATATTAATAAATGAGAACAAATGAAAACTAAAATAC
AATAACGAAGTGTAAGATAGGCATAAACATTTTCTTATCTAACACATGCTAACACATACCCTTA
ACATGATATCTTACAGGCTTGCTGGACAGATTGTAAATTGGACTCAACCTTTGTAGTTGCAAAT
TGAATACAGTATGCAAAAAATATTGGCCTGCATGACAGGAAACTTCACTGGCCAGTTCTCTAAA
AAAGAAGTTCTTACCGGAATGCTACTGGGAAATGTAAGGTCTTTGTGCAGTATGTTATAAAATG
TCTTTTTCCTGTTCTTTCCTCGGAAAGGTGTCCGCCCATACAGCATCTCATACAATAGAATTC
Conservation Information
Conserved circRNAs osa_circ_023355*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021