Detail information of Os04g0304200_circ_g.2


General Information
CircRNA Name Os04g0304200_circ_g.2
ID in PlantcircBase osa_circ_023354
Alias NA
Organism Oryza sativa
Position chr4: 13642299-13642630  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0304200
Parent gene annotation Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Pho
totropin). (Os04t0304200-01)
Parent gene strand -
Alternative splicing Os04g0304200_circ_g.3 Os04g0304200_circ_g.4 Os04g0304200_circ_g.5 Os04g0304200_circ_g.6 Os04g0304200_circ_g.7
Support reads 2
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0304200-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGTTGCTTGATGTCATTTGCACCAGCATTTGAACCTATACGATTTGAAGGATCTCTCTGAAG
TAATCCATGGATTAATTGCTTTGCTGCAAGACTAACcttaaaatgtatcaagatttaggggaac
atcttcatcaggcttcgcttttggttgagtttccttgccaattagtttcagaggaacatctagt
tcaggggg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 244
Transcript exons: 13642299-13642401,13642490-13642630
CTTAAAATGTATCAAGATTTAGGGGAACATCTTCATCAGGCTTCGCTTTTGGTTGAGTTTCCTT
GCCAATTAGTTTCAGAGGAACATCTAGTTCAGGGGGGCTCATGCAACGTATGAGTGGCCAATTG
ATGTCTTGAAAAAAGGAATGTTGCTTGATGTCATTTGCACCAGCATTTGAACCTATACGATTTG
AAGGATCTCTCTGAAGTAATCCATGGATTAATTGCTTTGCTGCAAGACTAAC

Genomic sequence CTTAAAATGTATCAAGATTTAGGGGAACATCTTCATCAGGCTTCGCTTTTGGTTGAGTTTCCTT
GCCAATTAGTTTCAGAGGAACATCTAGTTCAGGGGGGCTCTGCACATATAGTTATTTAGATAAT
CAGTGATGCACTAAACAAACTATCTTTGTCGAAATGTCTTGATGCTCGAAACATTCAAAGTACC
ATGCAACGTATGAGTGGCCAATTGATGTCTTGAAAAAAGGAATGTTGCTTGATGTCATTTGCAC
CAGCATTTGAACCTATACGATTTGAAGGATCTCTCTGAAGTAATCCATGGATTAATTGCTTTGC
TGCAAGACTAAC
Conservation Information
Conserved circRNAs osi_circ_014214
PMCS 0.247411044
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017