Detail information of Os04g0304200_circ_g.6


General Information
CircRNA Name Os04g0304200_circ_g.6
ID in PlantcircBase osa_circ_023358
Alias NA
Organism Oryza sativa
Position chr4: 13648969-13649028  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0304200
Parent gene annotation Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Pho
totropin). (Os04t0304200-01)
Parent gene strand -
Alternative splicing Os04g0304200_circ_g.2 Os04g0304200_circ_g.3 Os04g0304200_circ_g.4 Os04g0304200_circ_g.5 Os04g0304200_circ_g.7
Support reads 1
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0304200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCATCCACATTCTCTGCTGTAGCTTTGACcaagttggcatcaggaagctccctgactgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGTTGGCATCAGGAAGCTCCCTGACTGCATCATCCACATTCTCTGCTGTAGCTTTGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.24445
Functional Information
Coding potential Y
Potential coding position 13649011-13648971(-)
Potential amino acid sequence MWMMQSGSFLMPTWSKLQQRMWMMQSGSFLMPTWSKLQQRMWMMQSGSFLMPTWSKLQQRMWMM
QSGSFLMPT(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017