Detail information of Os04g0304200_circ_g.4


General Information
CircRNA Name Os04g0304200_circ_g.4
ID in PlantcircBase osa_circ_023356
Alias NA
Organism Oryza sativa
Position chr4: 13642299-13649911  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0304200
Parent gene annotation Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Pho
totropin). (Os04t0304200-01)
Parent gene strand -
Alternative splicing Os04g0304200_circ_g.2 Os04g0304200_circ_g.3 Os04g0304200_circ_g.5 Os04g0304200_circ_g.6 Os04g0304200_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0304200-01:16
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGTAGTTGATTAGCTGGACCGTGATCTCCTTCTGCTCCCTGATGGCCTCCCTGATCTTGTCC
ACCGTGCCCTGGTCGGTCTCCGGCCCTTGAAGGAATcttaaaatgtatcaagatttaggggaac
atcttcatcaggcttcgcttttggttgagtttccttgccaattagtttcagaggaacatctagt
tcaggggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.096690912
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017