Detail information of BGIOSGA014476_circ_g.1


General Information
CircRNA Name BGIOSGA014476_circ_g.1
ID in PlantcircBase osi_circ_014710
Alias Chr04:30312187_30313812(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28371047-28372672  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014476
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014482_circ_igg.1 BGIOSGA016994_circ_g.1 BGIOSGA016994_circ_g.2 BGIOSGA016994_circ_g.3 BGIOSGA016994_circ_g.4 BGIOSGA014479_circ_g.1 BGIOSGA016995_circ_g.1 BGIOSGA014475_circ_igg.1 BGIOSGA014475_circ_g.1 BGIOSGA014475_circ_g.2 BGIOSGA014474_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014476-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGACTTATAGGTTAGAGCACCGTTGACAGTAATCATGATTCCAGGGTCAGCAGGATCAATAGC
AGTACATCTTACATATAGAATCAGTACTGATAAGGCcccaagcaaggctcacagccataaggca
cagaaatgtgacatagttttttcttccaacacaattgttcagccactgcatcagaaacaccaaa
acaacatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCAAGCAAGGCTCACAGCCATAAGGCACAGAAATGTGACATAGTTTTTTCTTCCAACACAATT
GTTCAGCCACTGCATCAGAAACACCAAAACAACATCAGAATAGCCATGTCAACAAACTAAAGTG
AAAGGGCAAAAAGACAAGTGATGTTTATGAAACAGAAGCTTTAACATAAACCTACCCGGCAATG
ATGATCAAAACCATCAACACATTTGTCACAACTCCGACAATGTTTACTATTTTTCCGCACCTAT
ATCAATGTACAAGGAAAGGGTACTGAGTATGAACCAAAACTTTGGATTATTAGCATATACAGTG
AATAAAAACTGCTGTAAACAAATATGTTAAATGGTCTCTACTCACGATCCACTAATATTTCAGA
AGCACCAAAATAGTTAAGAAGCACAAAATGTTGATGGCACTAACAATAACTGATATAATGTCTC
AACAGGGGATTTTTTTTTTAGTTATTTCATACTTGGATCCTAAATTCCTAATCATCCTTAGTAC
GAGTTTTCTTTATTAGCTGTTAAACCATGCTAATTAATTCTGTTTGATCTGGGCATCCAGGGAA
AATATGTGGTGGAAACCACATATGTAGTGCAAACTTGCAAACTGCCGTTGGATCGAAAAATGGA
CGTCCGAGATTCATCCACATCATCATGAGTAAAAATTTTACTGTTTACTTGTGATGACGTGGAT
GAATATCGAACGTCCATGCATCGATACAGCGGTAGTGTGCAAGTGTGCACCACATATGTGGCCG
GGAATCTATGTCCCTGTATTGTCATAAGAATTCTAAATTCTGTGTGTCTATAGGCAAAAATTGA
TTCGAAGAACTTGTAATGAAAAGCTTTTTCAAAAGTTTTGCCTCTTACATAGCACCTGTTGACT
GTTAGAGAAGTCTTGAAACATTATAACTCTGGTTAGGCCACATTCATGCAAATATAATTCGAAG
TGATACAAATGAACGATAAGACTTTGTTATGTGCGTCTGTTGTAAAGCAACCATGAATAATAGC
CTTGTACCACTATGTTCAGGTCAAATATACAGGTGTTAAACAGACATGTAAACTTGAATCAATG
GATGCAGCAGGTAAGTATTTACAGTTCAATTATGTTTTTCAAAATACCAAGTCCATATATGTTG
CAAAAGCAGATAAAATGAATACGAGGTCTTAAAAATGGTATGGTATGCACACGCTAAGGATGGG
GCTGTGGATAAGTACCTCTGCATTGCAAAGGGTGCAAAAGAGTGCCTCTTCATCATAATCTTCT
TGTTGGTAAGCTTCGTCATCTTTGCGACAATCCTCTTTCACAAATATAGCACAACACAAACAAC
CAGCTCCTAAACATGATTTGTGCTTTTGGACATCCTCATAGGTTCTCGATTCTGATTTGCCCGT
TTCGTCTTGTGTGTCTAATTTTGCTTTTGAGCAAAACAAGATGATTTGCTACATTAGTATAACA
TGTGCCTACTACTACATGAATTACATCAAAGTTCCAAGTATGAGCAGATACCTTCTGACTTATA
GGTTAGAGCACCGTTGACAGTAATCATGATTCCAGGGTCAGCAGGATCAATAGCAGTACATCTT
ACATATAGAATCAGTACTGATAAGGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021