Plant Circular RNA Database

Detail information of Zm00001d037867_circ_g.8

			
						 General Information
					
						CircRNA Name
						Zm00001d037867_circ_g.8
					
						ID in PlantcircBase
						zma_circ_009074
					
						Alias
						Zm06circ00071, zma_circ_0002257
					
						Organism
						
							Zea mays						
					
						Position
						
							chr6: 140372142-140384054  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI2, find_circ
					
						Parent gene
						
							Zm00001d037867						
					
						Parent gene annotation
						
							protein_coding
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Zm00001d037867_circ_g.1 Zm00001d037867_circ_g.2 Zm00001d037867_circ_g.3 Zm00001d037867_circ_g.4 Zm00001d037867_circ_g.5 Zm00001d037867_circ_g.6 Zm00001d037867_circ_g.7 Zm00001d037867_circ_g.9 						
					
						Support reads
						NA
					
						Tissues
						leaf, endosperm, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d037867_T005:6
Zm00001d037867_T021:6
Zm00001d037867_T030:6
Zm00001d037867_T001:6
Zm00001d037867_T004:6
Zm00001d037867_T028:6
Zm00001d037867_T031:6
Zm00001d037867_T008:6
Zm00001d037867_T015:6
Zm00001d037867_T003:6
Zm00001d037867_T022:6
Zm00001d037867_T007:6
Zm00001d037867_T013:6
Zm00001d037867_T029:6
Zm00001d037867_T002:6
Zm00001d037867_T026:6
Zm00001d037867_T009:6

General Information
CircRNA Name	Zm00001d037867_circ_g.8
ID in PlantcircBase	zma_circ_009074
Alias	Zm06circ00071, zma_circ_0002257
Organism	Zea mays
Position	chr6: 140372142-140384054 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRI2, find_circ
Parent gene	Zm00001d037867
Parent gene annotation	protein_coding
Parent gene strand	+
Alternative splicing	Zm00001d037867_circ_g.1 Zm00001d037867_circ_g.2 Zm00001d037867_circ_g.3 Zm00001d037867_circ_g.4 Zm00001d037867_circ_g.5 Zm00001d037867_circ_g.6 Zm00001d037867_circ_g.7 Zm00001d037867_circ_g.9
Support reads	NA
Tissues	leaf, endosperm, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d037867_T005:6 Zm00001d037867_T021:6 Zm00001d037867_T030:6 Zm00001d037867_T001:6 Zm00001d037867_T004:6 Zm00001d037867_T028:6 Zm00001d037867_T031:6 Zm00001d037867_T008:6 Zm00001d037867_T015:6 Zm00001d037867_T003:6 Zm00001d037867_T022:6 Zm00001d037867_T007:6 Zm00001d037867_T013:6 Zm00001d037867_T029:6 Zm00001d037867_T002:6 Zm00001d037867_T026:6 Zm00001d037867_T009:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GTAGGAATTTTTTGTTTCTGGTGGAGATGGACTGCCTCGTGGAACTGTTGAAAACTTAGTCTCG
CGTGTACGTCCTGTAATAAATCTGATCAAGCAAGAGtacggtatcagccagttgagtaagttgg
aggacagcattaatgagaggtgggctcggaagaaaagtgaaaacactaacatcagtaagttctc
tttctagt

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 567
Transcript exons: 140372142-140372223,140375966-140376073,140376158-140376
264,140376697-140376774,140376855-140376950,140383959-14
0384054
TACGGTATCAGCCAGTTGAGTAAGTTGGAGGACAGCATTAATGAGAGGTGGGCTCGGAAGAAAA
GTGAAAACACTAACATCAGACGAAAAAGTGAAAAGTCAAAGAGTGCCGTCCCTAATCAGAAGAA
TCAATTTGATGGCAGCAGAAAAGAAATCAATACTGCTATTGATCGTCTCTGTGAATTTACTGGG
ACAAAGGTTATATTCTGGGACCTGCAGCAGCCATTTGTTGAGAATTTATACAGAAATGGTGTTG
CTCAAGCTCGATTGGACACCATAACTGAAGTGCTTGATTTGGTCCTTAATCAACTTTGTGATGT
CATTGTGGAACAACTGAGGGATCGTGTGGTTACAGGGCTTCTGCAAGCATGCCTGGATGGCTTC
CTTCGTGTGATACTGGATGGAGGTTCTACACGTGTCTTCTCTCCAAATGATGCAGCTTTATTGG
AGGAAGATCTTGAAACCCTGAAGGAATTTTTTGTTTCTGGTGGAGATGGACTGCCTCGTGGAAC
TGTTGAAAACTTAGTCTCGCGTGTACGTCCTGTAATAAATCTGATCAAGCAAGAG
						
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	GTAGGAATTTTTTGTTTCTGGTGGAGATGGACTGCCTCGTGGAACTGTTGAAAACTTAGTCTCG CGTGTACGTCCTGTAATAAATCTGATCAAGCAAGAGtacggtatcagccagttgagtaagttgg aggacagcattaatgagaggtgggctcggaagaaaagtgaaaacactaacatcagtaagttctc tttctagt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 567 Transcript exons: 140372142-140372223,140375966-140376073,140376158-140376 264,140376697-140376774,140376855-140376950,140383959-14 0384054 TACGGTATCAGCCAGTTGAGTAAGTTGGAGGACAGCATTAATGAGAGGTGGGCTCGGAAGAAAA GTGAAAACACTAACATCAGACGAAAAAGTGAAAAGTCAAAGAGTGCCGTCCCTAATCAGAAGAA TCAATTTGATGGCAGCAGAAAAGAAATCAATACTGCTATTGATCGTCTCTGTGAATTTACTGGG ACAAAGGTTATATTCTGGGACCTGCAGCAGCCATTTGTTGAGAATTTATACAGAAATGGTGTTG CTCAAGCTCGATTGGACACCATAACTGAAGTGCTTGATTTGGTCCTTAATCAACTTTGTGATGT CATTGTGGAACAACTGAGGGATCGTGTGGTTACAGGGCTTCTGCAAGCATGCCTGGATGGCTTC CTTCGTGTGATACTGGATGGAGGTTCTACACGTGTCTTCTCTCCAAATGATGCAGCTTTATTGG AGGAAGATCTTGAAACCCTGAAGGAATTTTTTGTTTCTGGTGGAGATGGACTGCCTCGTGGAAC TGTTGAAAACTTAGTCTCGCGTGTACGTCCTGTAATAAATCTGATCAAGCAAGAG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.128207701

Conservation Information
Conserved circRNAs	NA
PMCS	0.128207701

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							140372223-140376707(-)
						
						Potential amino acid sequence
						
							MLVFSLFFRAHLSLMLSSNLLNWLIPYSCLIRFITGRTRETKFSTVPRGSPSPPETKNSFRVSR
SSSNKAASFGEKTRVEPPSSITRRKPSRHACRSPVTTRSLSCSTMTSQS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	140372223-140376707(-)
Potential amino acid sequence	MLVFSLFFRAHLSLMLSSNLLNWLIPYSCLIRFITGRTRETKFSTVPRGSPSPPETKNSFRVSR SSSNKAASFGEKTRVEPPSSITRRKPSRHACRSPVTTRSLSCSTMTSQS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Han et al., 2020; Ma et al., 2021b

circRNA

Detail information of Zm00001d037867_circ_g.8

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