Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d037867_circ_g.6 |
ID in PlantcircBase | zma_circ_002337 |
Alias | circ2004 |
Organism | Zea mays |
Position | chr6: 140367936-140368454 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d037867 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | Zm00001d037867_circ_g.1 Zm00001d037867_circ_g.2 Zm00001d037867_circ_g.3 Zm00001d037867_circ_g.4 Zm00001d037867_circ_g.5 Zm00001d037867_circ_g.7 Zm00001d037867_circ_g.8 Zm00001d037867_circ_g.9 |
Support reads | 7 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d037867_T004:2 Zm00001d037867_T028:2 Zm00001d037867_T015:2 Zm00001d037867_T005:2 Zm00001d037867_T026:2 Zm00001d037867_T031:2 Zm00001d037867_T001:2 Zm00001d037867_T007:2 Zm00001d037867_T029:2 Zm00001d037867_T003:2 Zm00001d037867_T013:2 Zm00001d037867_T021:2 Zm00001d037867_T030:2 Zm00001d037867_T022:2 Zm00001d037867_T008:2 Zm00001d037867_T002:2 Zm00001d037867_T009:2 |
Conservation Information | |
---|---|
Conserved circRNAs | osi_circ_013434* |
PMCS | 0.026011561 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chen et al., 2017b |