Detail information of Zm00001d037867_circ_g.1


General Information
CircRNA Name Zm00001d037867_circ_g.1
ID in PlantcircBase zma_circ_002335
Alias circ1091
Organism Zea mays
Position chr6: 140354884-140359395  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI
Parent gene Zm00001d037867
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Zm00001d037867_circ_g.2 Zm00001d037867_circ_g.3 Zm00001d037867_circ_g.4 Zm00001d037867_circ_g.5 Zm00001d037867_circ_g.6 Zm00001d037867_circ_g.7 Zm00001d037867_circ_g.8 Zm00001d037867_circ_g.9
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d037867_T015:7
Zm00001d037867_T004:7
Zm00001d037867_T009:7
Zm00001d037867_T032:6
Zm00001d037867_T002:7
Zm00001d037867_T030:7
Zm00001d037867_T007:7
Zm00001d037867_T022:7
Zm00001d037867_T031:7
Zm00001d037867_T011:7
Zm00001d037867_T021:7
Zm00001d037867_T026:7
Zm00001d037867_T029:7
Zm00001d037867_T028:7
Zm00001d037867_T005:7
Zm00001d037867_T013:7
Zm00001d037867_T008:7
Zm00001d037867_T003:7
Zm00001d037867_T001:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCTATTCTAATTTTTATGCTTCGCAGGTTTGGGACCCTATATCCCCTCAACAACGCCATGGA
AATTCTATTGTAGAAGTCTATAGAATCATAGAAGAGgtttgttcttacaggtgagcaaggactt
ctgaaagtcgtgattgacaatttgaggaagatacctttgaaagaacagcgtggtccgcaagaaa
gattacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGTTCTTACAGGTGAGCAAGGACTTCTGAAAGTCGTGATTGACAATTTGAGGAAGATACCT
TTGAAAGAACAGCGTGGTCCGCAAGAAAGATTACACTTGAAAAGCCTGCGTAGTTCTGTTGATG
CTGAGGGTAGCTATCAAGACTTCACATTTTTCCAGTCTTTCCTGTCTCCAATTCAGAAATGGAC
GGACAAGAAACTAAATGACTATCACCTACATTTCTCCGAGGTTTGTTTTCCAACCTCCTGGTTT
GGCTTGTGCTACACTGTATGCATGGGCAGTTATTCAAAAGAAAATATACCCTTTACTACTTGAA
AGCTAATCCCTTTGTTTCGACAATTGTTTGATTTTATTAATTTGTTTACTTTATGTAACAATAT
TTACAATACCCTTTTACTGAAGATTTTTTTTGTAACGTGTCCCACTTCATGAGTTTTTTGTTCA
TTTGTTATTTTTAACCTAATCCACAGCACAAATGTGCATAAGGTTGGCCATCGTTATTCAGCTA
AATGAAATTGCATGACCTTTCTAGTCCGATCAATCAATTTAGTTCTGAAATCTCTTATGAACAT
TGTCATCTTCATCTCTTTCTCATTTTGGCCTTTTACATGTTTCATTTTCACTTCCCATGCATAG
TATTTACCACATGCTTTTCTCTTGATCCGCCGTTTTACCCATGGGTGCATGTTGCTATTATTCA
GACTTCAGTACCTGGCTCCTGGCATATCCTCTACACATTTTAGACATTATATTGTTATATATAT
ATATAATATACCACACTGAACCTTTTTATCTCTCATTTGGTTGCAACAAGAGATCATTATTTTC
TGCACATTGGGACTTTCTTATTTTTACAGGGCTCCAGCTTGATGGCTGATGTTGTGACAGTGGC
AATGCTTACAAGGCGGATCCTTGGTGAAGAAAATGACAAGGTCCTTTTACTTTACTTTTGTTTC
TGACCACTGTTGTTGCCATATCACTTTAACAGCAACAATTTCTTGTTCTATTTGAATATACGAT
CACTGCAGAGTATAGAGAGCCGAACTGTTCACTGTTTGCACATTTAGAATTTCTAATTTTGGGC
ACTCCTTTGCTTTTGTGCATCAGGTAGCGGAGTCTCCTGACAGAGATCAGATTGACCGATACAT
CACTTCTTCAGTCAAAAATACTTTCTTGAAGGTAACATCTGTGCAGCAGCCATTATTCCATTGG
TAGTGTAGTTCTAATTTATATGGACAGAATTTCTTACCTTTGATTTACCCCCATTTTGCCGTGA
AATGGTTATCGGTCACACATTTATGTTCTATGTGAAACCTTGAATCTTTATCAGTTGTCACTGG
TCATTGCACCTGTAAATTGCCTTTTCACATTTCATTTCTATCTGTTTGACAACCTTGATTCTTA
GGGAACTAGGGAAGCATCATATTGTATTATTCCCAGTGTGGACAAGATTCTTTTCAGCTGGATG
TGATGATATTTTTATGGTAGAGGACATCCAAGCCTGATATGAGATGTATGGTCTGGATTGTTGT
TTTTGTGCCTTTGCCTAAACAAAAAAAAAAGACTTGCGGAGAGTAAGACAGCACCCGGACATTA
CATTAAGAAGAAGACCTTCTCACGTAGGTCGAGAAAACCCTGAACCCGTGCCCTACCCATACAC
AACGGCACTGTAGCCCATGTAAGAACGACCACAACCCTCAGCCTGAAATTCACTCTCATGGGGA
GTCGAACTTAGGACATGAGGTGTGCTACTCCGACCATCTAACGAACTCAGCTAGAGGCCCTTTC
ACACCTTTGCCTAAACATTCCTGTGGATTCTTCTACCATGTGATTGTGAAGGATTTGTAGTGGT
GCCTTTGTGTCTAAACATTCCTGTGGATCACTTCCCTGTGTCTAAACCTGAATTGGACAACATT
GTTAAAATTCATATAGCTCAATAAAGAATTGGTACATGCTTGTGTTCCTTTTGATGATATGTTA
CCATCATATTTTTCTTGCAAGAAAAATATCCTACTATTTCATTGGTTGACGAAACATTCTACTC
TTTTCCTTTCAGATGGCACATTCTGTAGAGTTCAAAGCAGACACTACAAATGAGCATGTTTTAG
CATCTCTAGCTGAGGAGACAAAGAAACTGCTGAAAAAAGATACAGCCATTTTTACACCTGTTTT
GACAAAATGGCATCCACAGGCAGCAGTTGTTTCTGCTTCCCTCATTCATAAACTTTATGGAAAT
AAATTGGTAGGTTATATCCAGCATATCTTTTAAATGAATTTGACTTTGTAACTTTGTGATTCTG
CATGCTTACATAGAAGCGTTTTCCAGAGACCATTTCTTGAGCATGCTGAGCATCTTACGGAGGA
TGTGGTTTCTGTATTTCCGGCAGCTGATGCTTTGGAGCAATACGTAATGTCTGTGATGGCCTCC
GTCACGGGAGATGATGGTTTGGATAGCCTATGCAGACATAAACTAGTTCCATATCAGGTCAGCT
TAACCTTCATTAAGCAGTATTAAAACTTAGATAACTGCAAAGCAACCCATTTATTTACCCTACA
TTTTTTGCCATTTTATCAATCAATGTGTGGTGCACAACGAAAGATAGATAATGTGTTATGTATT
TAAGTGCATTGTTGGTGTAGTGTTGTTTATCCTAATTCTCTGCTTTCTTTTTCTTAGATTGAAA
GTAAATCTGGTACATTAGTTTTACGCTGGGTAAATGGGCAACTTGAGAGAATTGAAACTTGGGT
TAAAAGGGCTGCTGACCAAGAGGTAACACACATTTGTGACTTCTTTGTTTTTATATAATTTCTT
TGCCCTAATTGTCTTATTACTAGTACGACCATTCACCATGGGATTTGAAATGAAACATCCAAGT
TCTTTATATACTCAAAGTATCTTTTAGCTTAATTGCTAGTTTGACCTTTAGTTTAACAAAGTAA
AAACATATGTGTTAGTTTATTGTATTCTGTCTAAGTATTATGGGCCTTGGCCTAGCCCATGTAA
CTCTATTTTTTTAATATATGCAACACTCAGCTCACTCTATGGACTAGGGTTTTCATTCCTCAAC
ATGGTATCAGAGCCAGCAGCCTCTCTCCCTCCCATCCCTAGTGCCATAATCACCTCCTAGCATG
TAGGTCGCCGGCGCCTCCTCCACCCTCCCCTCTCGCCTCTCTCGTCGCTGGGCGGCTATCACCA
CTACCGCACCCCACTCTTCTCCTGTCGTCGCGGCCGACGCGGGGCTGCCATCCTCTTTGTGCGG
CACAGGGTCGTCACCCTTCTTGTTGGGCGTAGGCGCTACCGCGATCGCCTTCTCGAGAACCGCC
GCGACCGCCTTTCTACTCCCCACTACAGGCGTTGCCGTGGTCGCTGTCCCAAGCGCCCCTCTGC
CCGCCTCCCCCTCGACGGCTTGGGGCCTAGCCGTCCCAGGTCCAGCTGACCTTGCCTGGGCATC
GCCGGCCAGGGCCCAGGCGTGGTGGCTCTCGGCCTAGGCTTGGCCCTGCCCTTTCTAGCTACCA
TCTCGAGTGTCCTATTTGGGCCCATGGTGTCCTTCATATATAAAGAGTAGTTATATGGGCCAAT
ATGGAGTTATGGACCTTAACATGGGTCACTATGGTGGGCTAGGTTAGGATAACTTAGCTTAGTT
AGTTGGAGCTTTTTGTGGTCAGGGTGATAGAAGAATTGGAGCCGATCTTCTGAGAGATAACTCA
ACCAAGCTGTCAACAACCAAGTAAATTGGTCTATAACTCCAGATTACATTATTGAACCATATTA
AAGTCTAGAACATCAACGACTTAGAGTTCAAATGCATCTAAATGACAAAGAGAATAGGGTATTC
ATAATTTTCAGATTTGAAGCATTTACCAAACATGTAGATCATCATCCAATCCAATTGGAAGCCT
TCTCTTTCATCTCCAGCTGATGTTGCAATAGATGGCCCAGCTGCAACAGGTGCTTCTTCCTCCA
TATCCTCATTAGAATCATATTCTCCTCCATGTGCTGCTGGTTCATCTTCATCTCCTCATTGCCC
TCTTCGACAATATCTAGATCTACAACTATAGTATTCTTTGCACGTTTCTGAACCCTAATGGGCC
TAGACCAAATTCTTCGAGAGGCTGGCCCTAGAGCCCATGACATCACACATCGGGCTAGTCGATG
GCCACCCTAGTCGGACGACTAGTCGTGATTCGTCACCGACTAATCGGACGACTAGGTTTTTAGT
CGACCTCATCGGGGAGACTTATCAAGTCCATAGGACCGATAAGGTTGACTAATCGCGACTAGTC
AGATGACTTGAAAACATTGGACCATTGCTTGCATTTCCTTCTCAGTTCTTTACTGGCTTATTTT
TTCTTTGTTACATTAGTTAATACTTTTAAACTACAATTATCGTTTTCTATGTTCCTACCTTCTC
TATTCTAATTTTTATGCTTCGCAGGTTTGGGACCCTATATCCCCTCAACAACGCCATGGAAATT
CTATTGTAGAAGTCTATAGAATCATAGAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.002327128
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs zma-miR396g-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b