Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037867_circ_g.1 |
ID in PlantcircBase | zma_circ_002335 |
Alias | circ1091 |
Organism | Zea mays |
Position | chr6: 140354884-140359395 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d037867 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | Zm00001d037867_circ_g.2 Zm00001d037867_circ_g.3 Zm00001d037867_circ_g.4 Zm00001d037867_circ_g.5 Zm00001d037867_circ_g.6 Zm00001d037867_circ_g.7 Zm00001d037867_circ_g.8 Zm00001d037867_circ_g.9 |
Support reads | 2 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d037867_T015:7 Zm00001d037867_T004:7 Zm00001d037867_T009:7 Zm00001d037867_T032:6 Zm00001d037867_T002:7 Zm00001d037867_T030:7 Zm00001d037867_T007:7 Zm00001d037867_T022:7 Zm00001d037867_T031:7 Zm00001d037867_T011:7 Zm00001d037867_T021:7 Zm00001d037867_T026:7 Zm00001d037867_T029:7 Zm00001d037867_T028:7 Zm00001d037867_T005:7 Zm00001d037867_T013:7 Zm00001d037867_T008:7 Zm00001d037867_T003:7 Zm00001d037867_T001:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.002327128 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | zma-miR396g-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |