Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037867_circ_g.3 |
ID in PlantcircBase | zma_circ_009070 |
Alias | zma_circ_0002344 |
Organism | Zea mays |
Position | chr6: 140354885-140357372 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d037867 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | Zm00001d037867_circ_g.1 Zm00001d037867_circ_g.2 Zm00001d037867_circ_g.4 Zm00001d037867_circ_g.5 Zm00001d037867_circ_g.6 Zm00001d037867_circ_g.7 Zm00001d037867_circ_g.8 Zm00001d037867_circ_g.9 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d037867_T004:5 Zm00001d037867_T031:5 Zm00001d037867_T013:5 Zm00001d037867_T029:5 Zm00001d037867_T026:5 Zm00001d037867_T022:5 Zm00001d037867_T021:5 Zm00001d037867_T001:5 Zm00001d037867_T030:5 Zm00001d037867_T032:4 Zm00001d037867_T002:5 Zm00001d037867_T008:5 Zm00001d037867_T015:5 Zm00001d037867_T003:5 Zm00001d037867_T005:5 Zm00001d037867_T007:5 Zm00001d037867_T009:5 Zm00001d037867_T011:5 Zm00001d037867_T028:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.121971014 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
140357299-140357295(+) |
Potential amino acid sequence |
MSVMASVTGDDGLDSLCRHKLVPYQFVLTGEQGLLKVVIDNLRKIPLKEQRGPQERLHLKSLRS SVDAEGSYQDFTFFQSFLSPIQKWTDKKLNDYHLHFSEGSSLMADVVTVAMLTRRILGEENDKV AESPDRDQIDRYITSSVKNTFLKMAHSVEFKADTTNEHVLASLAEETKKLLKKDTAIFTPVLTK WHPQAAVVSASLIHKLYGNKLLMLWSNT*(+) |
Sponge-miRNAs | zma-miR396g-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |