Detail information of Os12g0443700_circ_g.7


General Information
CircRNA Name Os12g0443700_circ_g.7
ID in PlantcircBase osa_circ_011417
Alias NA
Organism Oryza sativa
Position chr12: 14902819-14903497  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0443700
Parent gene annotation Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment). (Os1
2t0443700-01);Similar to Glu-prolyl-tRNA aminoacyl synthetase (F
ragment). (Os12t0443700-02);Similar to Aminoacyl-tRNA synthase.
(Os12t0443700-03)
Parent gene strand -
Alternative splicing Os12g0443700_circ_g.1 Os12g0443700_circ_g.2 Os12g0443700_circ_g.3 Os12g0443700_circ_g.4 Os12g0443700_circ_g.5 Os12g0443700_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0443700-02:2
Os12t0443700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTTACTTTAAGCAATTCCCAGATCTCCATCGCCCATGGCCTCAAGATATAACAACCGGATAT
GTCATAGTACTCGATCATTTCACTGTTAACGACAACctctggtgcaaagccctcaatgtggtct
ttctccttctgtaggacattctcagtgacaaacaatgggaaataataaggtttcagcttcagct
tttttatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGGTGCAAAGCCCTCAATGTGGTCTTTCTCCTTCTGTAGGACATTCTCAGTGACAAACAAT
GGGAAATAATAAGGTTTCAGCTTCAGCTTTTTTATTTCTGCATCAAAGAATTCCTGCACCAAAC
CGCATAGGACTTAGGGAAAAAGAACATGATTATAGTAATGCCATTTTACTTAATAAACTGCAAA
CAAAGAAACAAAGGCAAGATCCTTGATGCTAAGAACGACACTTTTACACAACTCAATCAGAAGT
TACTGATGATATAAAATAGACATGTTGAGATAAACTTATTAGTCCAAAAGGGCATCAGAATTAG
CATTTGAAAAGCTGATTTGTTAATGTGATGTTTGCAGTAACTGTCAATCAGGGAAAAGGAGTGC
ATAAGGTTGACAAGATAAATACTTCAGGCAACACTCTAGACCAACTTGTGGACAGAGATTACTT
TTTGTTATCATCACTGATGCTTAGGTTACAAGAGTACAACAGGCAACAATGACTACTTACATTT
CATTGCAAAGGGAAATAAATAAAAATTAGCATCTTGATTAATTGAATTTAAGCAGGCATTGAGA
AAAAACTTACTTTAAGCAATTCCCAGATCTCCATCGCCCATGGCCTCAAGATATAACAACCGGA
TATGTCATAGTACTCGATCATTTCACTGTTAACGACAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.14702948
Functional Information
Coding potential Y
Potential coding position 14903481-14902821(-)
14902867-14903478(-)
Potential amino acid sequence MIEYYDISGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQKEKDHIEGFAPE
VVVNSEMIEYYDISGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQKEKDHI
EGFAPEVVVNSEMIEYYDISGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQ
KEKDHIEGFAPEVVVNSEMIEYYDISGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFV
TENVLQKEKDHIEGFAPE(-)
MSYRRRKTTLRALHQRLSLTVK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017