Detail information of Os12g0443700_circ_g.1


General Information
CircRNA Name Os12g0443700_circ_g.1
ID in PlantcircBase osa_circ_011411
Alias NA
Organism Oryza sativa
Position chr12: 14898183-14904304  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os12g0443700
Parent gene annotation Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment). (Os1
2t0443700-01);Similar to Glu-prolyl-tRNA aminoacyl synthetase (F
ragment). (Os12t0443700-02);Similar to Aminoacyl-tRNA synthase.
(Os12t0443700-03)
Parent gene strand -
Alternative splicing Os12g0443700_circ_g.2 Os12g0443700_circ_g.3 Os12g0443700_circ_g.4 Os12g0443700_circ_g.5 Os12g0443700_circ_g.6 Os12g0443700_circ_g.7
Support reads 1
Tissues seed
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os12t0443700-02:10
Os12t0443700-01:10
Os12t0443700-03:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCCAAATCTCCAACCCAACCCAACCCAACCCAACCACGCCGCACCTCCGCCTCCCTTGCCGCC
GCCTCCACCTCCCTTCCCGGACGACATGGCTCCGCCctcttcatcacaccatggagccaggatc
aattttttgtcattcagagccactatgaattcatcccaggtgttaacaaccttaaggcaggcat
ctctcttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.104180865
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017