Detail information of Os12g0443700_circ_g.4


General Information
CircRNA Name Os12g0443700_circ_g.4
ID in PlantcircBase osa_circ_011414
Alias Os_ciR7329
Organism Oryza sativa
Position chr12: 14900350-14901180  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os12g0443700
Parent gene annotation Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment). (Os1
2t0443700-01);Similar to Glu-prolyl-tRNA aminoacyl synthetase (F
ragment). (Os12t0443700-02);Similar to Aminoacyl-tRNA synthase.
(Os12t0443700-03)
Parent gene strand -
Alternative splicing Os12g0443700_circ_g.1 Os12g0443700_circ_g.2 Os12g0443700_circ_g.3 Os12g0443700_circ_g.5 Os12g0443700_circ_g.6 Os12g0443700_circ_g.7
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0443700-01:2
Os12t0443700-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGAACTGCGGTTGCAAAAACAAGTACAGTACCTCTTCGTCAGCCTCCTCTTTAGTTGCAAAA
GCTGTATGCCCTTCTTGCCAAAGGAACTCACGGCTCttttcctccctttagaaactggaactgc
taaaaattcttcataaatccttcggtagagttccaaaatttggagaacctgaacattgtcatgg
attaaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTTCCTCCCTTTAGAAACTGGAACTGCTAAAAATTCTTCATAAATCCTTCGGTAGAGTTCCAA
AATTTGGAGAACCTGAACATTGTCATGGATTAAAATAACTCAGCATCCTTTTAAATTAACAACA
CGTTACTCATTATTTCTGTTCGCTCCATCAGATATTCTACAAAATAGTTTTTTGTGCCAAGCAA
CCACTGGAGATAAATACAACCTTTTCACATTCGAAAATGTAAAACAAGGTTCAGGAAGTGTAAT
GAAATTGAAATATTACTGATGTCAAAACGACTATTTACACTAGCAGTATAATATCTTCTTCCTA
GAATACTATGCATTGATATTGGGCCAGCTGTTGCTTCACACTAGCCAAAAGCAGGACAATAGTA
CTTAAAGATAGTTTACAACAGAAACACCAATATTTGTTAAACAAAAGATGCTGCTTATTTAGAA
CCAAAAATTCCCTGAGCAAGTTATGGCCAGCTGCAAATGGCAGCAGATTGCCCATTAGGGAGGC
CCATGGATTATGGAGATTGCTCATATGGCAAGGCAGCAGCAAAAATGCTAGTGCTGGAAAAGTA
GCTTAAGGTTAATTTAGCACATCTTGATTGGAGAGCTAATTTCTTAGTGATCATTTAGTTCTGA
CAGGGAGAATAATGGAACAGTATTCTCATTTTCCTAAGAATCCCCCCTTCATCCATGCATTCGA
GCCCACTTCAATATGGCAGTTAACCCTGATGAACTGCGGTTGCAAAAACAAGTACAGTACCTCT
TCGTCAGCCTCCTCTTTAGTTGCAAAAGCTGTATGCCCTTCTTGCCAAAGGAACTCACGGCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.239129753
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015