Detail information of Os12g0443700_circ_g.2


General Information
CircRNA Name Os12g0443700_circ_g.2
ID in PlantcircBase osa_circ_011412
Alias Os12circ06023
Organism Oryza sativa
Position chr12: 14898315-14900425  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os12g0443700
Parent gene annotation Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment). (Os1
2t0443700-01);Similar to Glu-prolyl-tRNA aminoacyl synthetase (F
ragment). (Os12t0443700-02);Similar to Aminoacyl-tRNA synthase.
(Os12t0443700-03)
Parent gene strand -
Alternative splicing Os12g0443700_circ_g.1 Os12g0443700_circ_g.3 Os12g0443700_circ_g.4 Os12g0443700_circ_g.5 Os12g0443700_circ_g.6 Os12g0443700_circ_g.7
Support reads 3
Tissues leaf and panicle
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0443700-02:4
Os12t0443700-01:4
Os12t0443700-03:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACCAGCAAATTTTTCCATCTCACTTTTCCTCCCTTTAGAAACTGGAACTGCTAAAAATTCTTC
ATAAATCCTTCGGTAGAGTTCCAAAATTTGGAGAACctcatcaagtaacccattaactttctca
accaagtcagccgtaggaatatcagcttttgcaccattgtctcgcctaacaacacgggcctgaa
aagcagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATCAAGTAACCCATTAACTTTCTCAACCAAGTCAGCCGTAGGAATATCAGCTTTTGCACCA
TTGTCTCGCCTAACAACACGGGCCTGAAAAGCAGATGATGTTTTCATTAACTCCCTCCATTTCA
TAATATAAGGCACAACTACTTTTTAAAGTTGTTCCATAATATAAGGCATGCATGCATGCATGCC
ATTAACTAACCCATCTTCTCTACTAAAATATTATTATTTAAATTCTCCACCATCAAGATCTCTA
ATTTTATTGGGTGCATGAATTACATTTATTAGATTAATCCAAACTATAAGGTGATAATAATTAT
TTCTTGGTCTTTGGGCTAAGGGTAGCTGTGCTTTATATTTTGGAATGGAGGGAGTATTAGTTGG
AATAAAGGTTCAGGGAATAGTAGCAAATTAAACAGCACAACAAAATGAAAGTTACTCCATCCAT
GCCAAACCTATATGAGAAATGGTTGAGGGCACCATTCAGTCACTGGAAAAGATGTGAAAGTTGC
TTAATTGAATCAAATTAACATATTTTAAGTAGAAAGAGGAGAAATAGGTTATTAAATGAACTAG
CCAACTCATGCATTGCAACGATCTAGGATAAATATAAAATCTGAACTCAAGAACAATATATAGA
CTTCGGATTGATCATCAGTTCACAAATGATCCTATTATTACGAACCACATGTGCAAATGATATA
ATTATTCAGATAAAAGAAACACACGTGCATGTATGCACAGAACCCATGGTGATGGTGGTGGTAT
GGCAGACTTACCATCACCACCACCACCACTAGCTCTTTTTCTCTAACAGTAAAGATATAGCAGT
TTTCAGGAAAATGCATGATAACAAAGGTGCCCTTAGTTTATATATTCATTAGCTACTTACTGTT
TTGATGCCATTAATTAATCATATTTTCCATAGGGAATAGAGAACAAAGAAGCCATTTACACTTC
ATCTTATGCTAACAAGAAAAACCAATTTATACAAGTACACTGATCTACTAATAAACTTGTGGAT
TCTATCATGGATATGGAAGGCATTATTAATTTATCATTAACTACTTTATGAAGAGTCCTAGAAG
CATTATAGTAATTAATGTGCCACTGATCAATGAAGTTAATAAATTAAATGGTGTGACCTCTGTA
CCTGATTGTTTGCCATATCTTTTGGACCTATCTCAATTCTTAGAGGAACGCCTTTCATCTCCCA
GTGGGAATACTTCCATCCTGGAGAATAGTTTTCGCGGGTATCCAAGTCTGCTCGAATACCAGCT
TTCTCCAGTGTCTCAACAGTCTTTTTGCATTCGTTTACAATAGCTGTTGTGTCAACATCTTTGT
ATGGAACAGGAATAACAATGACCTGCAGAGGTGCCACCCTTGGTGGAAGCACTAAACCTTTGTC
ATCTCCGTGTGTCATCACCATCACCCCAATCTGCAAAACAAGCATAGGGTCAATACTACAAATG
TGAACATAATTTGGGTAGAGAACTCAGCAACTGGAAATAACAGATACATAGAATTAAAGTAAAA
ATAATAATTTAAAAAACTAGCGCATTCTGTATTTTAAAATTACCAGAGAGCTTAGCACTCAAAG
CTAGCTCCTCATTCACAATAAAAGCCTCATTTCTTTTGTAAAACATTACCACTTCAAAAGGGCA
AAACAAGAAGAAAATTCCAGGTACATTCCAAAATTTAACAATATATGAGAATTACCGAGCGGGT
GGTGTATGCCCAAGAGTTCTGCCACACCATGGATCTTGAGCCCTTATCATTCTCAAAAGTGATA
TCAAACATCTTTGCAAAGTTTTGACCAAGACAATGTGATGTTGCCCCTTGTACACCACGTCCTG
TGTTTGGAATGAAGGCCTGCAAATATGATAAAATTTTATTATTACTAAATATAAAGATAAGTAC
TCTTCTTCATCAGGGTAACTACAGAAAAACTAATCGGGTGGAATGAAGCAAACATTTCATATTA
ATACCTCAACACTTGTTGTATACAGTCCACCAGCAAATTTTTCCATCTCACTTTTCCTCCCTTT
AGAAACTGGAACTGCTAAAAATTCTTCATAAATCCTTCGGTAGAGTTCCAAAATTTGGAGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.129991355
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015