Detail information of Os12g0443700_circ_g.5


General Information
CircRNA Name Os12g0443700_circ_g.5
ID in PlantcircBase osa_circ_011415
Alias Os_ciR7330
Organism Oryza sativa
Position chr12: 14901855-14901994  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os12g0443700
Parent gene annotation Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment). (Os1
2t0443700-01);Similar to Glu-prolyl-tRNA aminoacyl synthetase (F
ragment). (Os12t0443700-02);Similar to Aminoacyl-tRNA synthase.
(Os12t0443700-03)
Parent gene strand -
Alternative splicing Os12g0443700_circ_g.1 Os12g0443700_circ_g.2 Os12g0443700_circ_g.3 Os12g0443700_circ_g.4 Os12g0443700_circ_g.6 Os12g0443700_circ_g.7
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0443700-02:1
Os12t0443700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCACTTGTAGGACGGATTGCGATAGGAGCTTCCAGATCAGATTTTCCTGATTTAGTGACCCA
TGCTACcactggttacacctcaaaggtaagtcccgatgacttcttatccatttggagaagtatg
gatacatgacag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACTGGTTACACCTCAAAGGTAAGTCCCGATGACTTCTTATCCATTTGGAGAAGTATGGATACA
TGACAGTCTCACTTGTAGGACGGATTGCGATAGGAGCTTCCAGATCAGATTTTCCTGATTTAGT
GACCCATGCTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.440835119
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015