Plant Circular RNA Database

Detail information of Os05g0317200_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os05g0317200_circ_g.8
					
						ID in PlantcircBase
						osa_circ_027418
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 14696224-14699242  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0317200						
					
						Parent gene annotation
						
							AMP-dependent synthetase and ligase domain containing protein. (
Os05t0317200-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0317200_circ_g.1 Os05g0317200_circ_g.2 Os05g0317200_circ_g.3 Os05g0317200_circ_g.4 Os05g0317200_circ_g.5 Os05g0317200_circ_g.6 Os05g0317200_circ_g.7 Os05g0317200_circ_g.9 Os05g0317200_circ_g.10 Os05g0317200_circ_g.11 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0317200-01:3

General Information
CircRNA Name	Os05g0317200_circ_g.8
ID in PlantcircBase	osa_circ_027418
Alias	NA
Organism	Oryza sativa
Position	chr5: 14696224-14699242 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0317200
Parent gene annotation	AMP-dependent synthetase and ligase domain containing protein. ( Os05t0317200-01)
Parent gene strand	+
Alternative splicing	Os05g0317200_circ_g.1 Os05g0317200_circ_g.2 Os05g0317200_circ_g.3 Os05g0317200_circ_g.4 Os05g0317200_circ_g.5 Os05g0317200_circ_g.6 Os05g0317200_circ_g.7 Os05g0317200_circ_g.9 Os05g0317200_circ_g.10 Os05g0317200_circ_g.11
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0317200-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTCTGATTCTCCAATGCCCCGAGGAGAGGTTGTAGTTGGTGGATACAGCATAACAAAAGGTTAT
TTCAACAATGAAGCAAAAACAAATGAGGTCTACAAGgttggtgagaagggtggtctgaccaaaa
agctgtttgacattgcctataaacgaaatcttggagctattgaaggaagttggtttggatcctg
ggcaccag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 480
Transcript exons: 14696224-14696453,14697128-14697245,14699111-14699242
GTTGGTGAGAAGGGTGGTCTGACCAAAAAGCTGTTTGACATTGCCTATAAACGAAATCTTGGAG
CTATTGAAGGAAGTTGGTTTGGATCCTGGGCACCAGAGAGGATGATATGGGATAACCTCATTTT
TAAACCAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTA
TCGAGTGACACACAAAGATTTATGAATATATGTCTTGGTGTACCAGTAGGTCAAGGCTATGGAT
TGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGCCGTGTTGG
TCCACCCCTTCCTTGTTGCTATGTCAAGCTCGTTTCATGGGAAGAAGGTGGCTATAAAATTTCT
GATTCTCCAATGCCCCGAGGAGAGGTTGTAGTTGGTGGATACAGCATAACAAAAGGTTATTTCA
ACAATGAAGCAAAAACAAATGAGGTCTACAAG
						
					

						Genomic sequence
						
							GTTGGTGAGAAGGGTGGTCTGACCAAAAAGCTGTTTGACATTGCCTATAAACGAAATCTTGGAG
CTATTGAAGGAAGTTGGTTTGGATCCTGGGCACCAGAGAGGATGATATGGGATAACCTCATTTT
TAAACCAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTA
TCGAGTGACACACAAAGATTTATGAATATATGTCTTGGGTAATTTCTTTTGTCCTATTTGGATT
ATCTTAAATTTAACCATTTGCAATCAGTGAGATGTCAACTGAAGAAGTATTCTTCCAAAAATTT
CCACTGAGTTTATTTGTTGAAGATTGTGTGCCAGTCGTAGAGCATAGTGTCATTTCTCGGATAC
TTGAATTATCTTTTTTTTCTTCGAAAAATGAGGCTAGAATTACATGAATTCCAAAAACATACAA
GGAGTCAACTTTTTTTTTTGTCTTATTGTACATCTTAAGTTTGTTTAAGACGTTACTAAAAAAA
ATACTGATTTTAATGAACTTACCTCATGGAAAATTCAAGTTCAATGCCATACTCAAGTCCTAGA
CATTGTTAGAGTGTACGTTTGCAGGTAGTGCGCTCATCAAACCTTTGGATTTATTTATTTACAG
AAAACAAAACATTTGTTGGATAAGCTCATAAAATTTGGGCGTGCTACTTATATGTTTTTTTAAT
TCAAACAGTTTGTCAAAAATCACTTTATAGTGAAATTTGTATTTGCACGTTTAGTGAATCAAAT
GCTGAAAGTTGAAATATTAAACAGAGGACCTTTCTAGAGTACATGCACTATGCTATAATGTGAT
GAGCTTCCTTTTATTGTATGTCGCTGCATTTGTTTTTGGTTCTTATGCAGTTTTGAATTACCTG
TGCTGCAGTGTACCAGTAGGTCAAGGCTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTT
CTGAATGGGATGACACAAGTGTGGGCCGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAGGT
CTGTGCCTTACTAGGGAGAGTCAGCTTATCTGATTTATTTGCTTATACTTACTAGGGACAGTCA
ACTTATCTGATGTATATGCATATAATTAACAGATATAAGTGATATTTATGTATGCAAATTTATA
ATTAAATGAACATAATAGCGTTAAGATACATAAAATGGTAAAAATCTGTTTATACTATGCCTAG
AGAGAAATTACTGTCTCACGGCCCCACACCTCTCCGACCAAGGCTACCAGCCCATGTCTCCCAC
AAGGCTTTATCACCCTGGGGATTTCCATGAGGATATAACAACAGACAACAACTTAATTATTAAT
AACCAGTCAAAAGTAACTGTAAATAACAATGTGGAAATAGTTCCATACACCTATGGATTCTCTC
TTCTGATATACCGTTCATACATATATAGTTTTTTTATCAGTTTTGACATACTACATAATATTAT
ACACCTATTGCTATCTGCATGAGCTGGCCTGCCATGATAATACGTCTTCCTTAGAGCATCTCCA
GCAGGGACCCTAAACCCAGCCCCTAACTAAATTATGAGAGTTAACATGAAAAAATCAAGTCCAG
CAGAGACCCTACTATAGACCCCAAAGTGAGGAGGCCCCTGAATCCTCCCTCGAAACCCCCAGTC
CTGGGGGCTCAACAGGATGGCCCCTATCGACGTTTTTTCTGGTGCAGACGTTATTTTCCCTTCG
CGCGCTCATCTCACATTCCCTGTCCCACAACACCCTGCGATGCATTTGTATCTCCTCCGGCTAC
CGTCGTTGACCCCTCACCTCCGGCAAGACCACCCCAGAAAGGTCCGCCATCCGCTCGCACGTCT
GCGAATCACCGCACTGATTTTAGCTCTTTTGCCTGCCAACCCGCGCCACCTCCTGCTCGCGCTG
GCGGCGCTGCCACCCGGAGGGCCAGCGCTTGCCCACTAGCCCATCCCCGCCTGTCCCTCTTCTG
CCTGTCTGCTTTCCCCTGCAATGTCCCTGCACGCAGAATGCAGGGAGTAGATTTTTCTTTGCAT
TTTTTTTACTGAGGCATAGAGGATTCTAGTGGAAAGATTATTATTTTTCCATTGGGTCGAGATA
TACAGGATTGGGGAAAGAGACAGTGGTATATATTCATTTTTTTCTTTGACACATCATATAGGAT
AATATTTCAGTAGTTTGGTTAAATATATACTCTATAGTTTATGCTGTTCGGGCATAATGCACCT
GATAATTAACTTTTACATCGATATGATCTTGTAAAATATTTATCTTTTAATTATTGAGATGTTA
AATTAGACATAAACCTATAGTCTATATTAATATAATAGAGAATAATAAATATGGTCTAAGAAAT
GGGGGCTGTTGCTGGAGTTGAAGGCATTTGTAGGGTCCTAGAGAATTGGGGGCAGCCCTCATTT
GGTTTTTAGGGGCTTTAAAATGAGGGCTTCTGCTAGAGATGCTCTTACTATTTGATCCTATTGT
TCAGAAGCTACACTATTTTGGATGATTAGACTCTCTTTCTTTATCAAACAATACATAAGTCTTC
CCCTTCCCCTTCTCTCACTTTTATTCAAGTTATAGTAATTATTTTGTTTCAACCCAAATAAAGA
TTATGTGAGTTGCTGTATGTTCATCTTGATGTTAGGAAAAATGGCCTATAGACAACAATAAATT
TGTTACCTTAAGAATGACCAACATCCCCATTCTAAAACTTAAAGTGGCACACAGAAAGTCTGTA
AAATTATTTTACAATACCACAATAGTTTTGGTTGGTTTATTAGCAAGCATTTCATTCTGTTGTG
AGATATTTCTGTTCTCTTATCATGTTGTATATGTATCTCTAATTCTCTTTTTTCTGATCAAATG
AATTCAGCTCGTTTCATGGGAAGAAGGTGGCTATAAAATTTCTGATTCTCCAATGCCCCGAGGA
GAGGTTGTAGTTGGTGGATACAGCATAACAAAAGGTTATTTCAACAATGAAGCAAAAACAAATG
AGGTCTACAAG
						
					

			
		

Sequences
Splice junction sequence	TTCTGATTCTCCAATGCCCCGAGGAGAGGTTGTAGTTGGTGGATACAGCATAACAAAAGGTTAT TTCAACAATGAAGCAAAAACAAATGAGGTCTACAAGgttggtgagaagggtggtctgaccaaaa agctgtttgacattgcctataaacgaaatcttggagctattgaaggaagttggtttggatcctg ggcaccag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 480 Transcript exons: 14696224-14696453,14697128-14697245,14699111-14699242 GTTGGTGAGAAGGGTGGTCTGACCAAAAAGCTGTTTGACATTGCCTATAAACGAAATCTTGGAG CTATTGAAGGAAGTTGGTTTGGATCCTGGGCACCAGAGAGGATGATATGGGATAACCTCATTTT TAAACCAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTA TCGAGTGACACACAAAGATTTATGAATATATGTCTTGGTGTACCAGTAGGTCAAGGCTATGGAT TGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGCCGTGTTGG TCCACCCCTTCCTTGTTGCTATGTCAAGCTCGTTTCATGGGAAGAAGGTGGCTATAAAATTTCT GATTCTCCAATGCCCCGAGGAGAGGTTGTAGTTGGTGGATACAGCATAACAAAAGGTTATTTCA ACAATGAAGCAAAAACAAATGAGGTCTACAAG
Genomic sequence	GTTGGTGAGAAGGGTGGTCTGACCAAAAAGCTGTTTGACATTGCCTATAAACGAAATCTTGGAG CTATTGAAGGAAGTTGGTTTGGATCCTGGGCACCAGAGAGGATGATATGGGATAACCTCATTTT TAAACCAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTA TCGAGTGACACACAAAGATTTATGAATATATGTCTTGGGTAATTTCTTTTGTCCTATTTGGATT ATCTTAAATTTAACCATTTGCAATCAGTGAGATGTCAACTGAAGAAGTATTCTTCCAAAAATTT CCACTGAGTTTATTTGTTGAAGATTGTGTGCCAGTCGTAGAGCATAGTGTCATTTCTCGGATAC TTGAATTATCTTTTTTTTCTTCGAAAAATGAGGCTAGAATTACATGAATTCCAAAAACATACAA GGAGTCAACTTTTTTTTTTGTCTTATTGTACATCTTAAGTTTGTTTAAGACGTTACTAAAAAAA ATACTGATTTTAATGAACTTACCTCATGGAAAATTCAAGTTCAATGCCATACTCAAGTCCTAGA CATTGTTAGAGTGTACGTTTGCAGGTAGTGCGCTCATCAAACCTTTGGATTTATTTATTTACAG AAAACAAAACATTTGTTGGATAAGCTCATAAAATTTGGGCGTGCTACTTATATGTTTTTTTAAT TCAAACAGTTTGTCAAAAATCACTTTATAGTGAAATTTGTATTTGCACGTTTAGTGAATCAAAT GCTGAAAGTTGAAATATTAAACAGAGGACCTTTCTAGAGTACATGCACTATGCTATAATGTGAT GAGCTTCCTTTTATTGTATGTCGCTGCATTTGTTTTTGGTTCTTATGCAGTTTTGAATTACCTG TGCTGCAGTGTACCAGTAGGTCAAGGCTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTT CTGAATGGGATGACACAAGTGTGGGCCGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAGGT CTGTGCCTTACTAGGGAGAGTCAGCTTATCTGATTTATTTGCTTATACTTACTAGGGACAGTCA ACTTATCTGATGTATATGCATATAATTAACAGATATAAGTGATATTTATGTATGCAAATTTATA ATTAAATGAACATAATAGCGTTAAGATACATAAAATGGTAAAAATCTGTTTATACTATGCCTAG AGAGAAATTACTGTCTCACGGCCCCACACCTCTCCGACCAAGGCTACCAGCCCATGTCTCCCAC AAGGCTTTATCACCCTGGGGATTTCCATGAGGATATAACAACAGACAACAACTTAATTATTAAT AACCAGTCAAAAGTAACTGTAAATAACAATGTGGAAATAGTTCCATACACCTATGGATTCTCTC TTCTGATATACCGTTCATACATATATAGTTTTTTTATCAGTTTTGACATACTACATAATATTAT ACACCTATTGCTATCTGCATGAGCTGGCCTGCCATGATAATACGTCTTCCTTAGAGCATCTCCA GCAGGGACCCTAAACCCAGCCCCTAACTAAATTATGAGAGTTAACATGAAAAAATCAAGTCCAG CAGAGACCCTACTATAGACCCCAAAGTGAGGAGGCCCCTGAATCCTCCCTCGAAACCCCCAGTC CTGGGGGCTCAACAGGATGGCCCCTATCGACGTTTTTTCTGGTGCAGACGTTATTTTCCCTTCG CGCGCTCATCTCACATTCCCTGTCCCACAACACCCTGCGATGCATTTGTATCTCCTCCGGCTAC CGTCGTTGACCCCTCACCTCCGGCAAGACCACCCCAGAAAGGTCCGCCATCCGCTCGCACGTCT GCGAATCACCGCACTGATTTTAGCTCTTTTGCCTGCCAACCCGCGCCACCTCCTGCTCGCGCTG GCGGCGCTGCCACCCGGAGGGCCAGCGCTTGCCCACTAGCCCATCCCCGCCTGTCCCTCTTCTG CCTGTCTGCTTTCCCCTGCAATGTCCCTGCACGCAGAATGCAGGGAGTAGATTTTTCTTTGCAT TTTTTTTACTGAGGCATAGAGGATTCTAGTGGAAAGATTATTATTTTTCCATTGGGTCGAGATA TACAGGATTGGGGAAAGAGACAGTGGTATATATTCATTTTTTTCTTTGACACATCATATAGGAT AATATTTCAGTAGTTTGGTTAAATATATACTCTATAGTTTATGCTGTTCGGGCATAATGCACCT GATAATTAACTTTTACATCGATATGATCTTGTAAAATATTTATCTTTTAATTATTGAGATGTTA AATTAGACATAAACCTATAGTCTATATTAATATAATAGAGAATAATAAATATGGTCTAAGAAAT GGGGGCTGTTGCTGGAGTTGAAGGCATTTGTAGGGTCCTAGAGAATTGGGGGCAGCCCTCATTT GGTTTTTAGGGGCTTTAAAATGAGGGCTTCTGCTAGAGATGCTCTTACTATTTGATCCTATTGT TCAGAAGCTACACTATTTTGGATGATTAGACTCTCTTTCTTTATCAAACAATACATAAGTCTTC CCCTTCCCCTTCTCTCACTTTTATTCAAGTTATAGTAATTATTTTGTTTCAACCCAAATAAAGA TTATGTGAGTTGCTGTATGTTCATCTTGATGTTAGGAAAAATGGCCTATAGACAACAATAAATT TGTTACCTTAAGAATGACCAACATCCCCATTCTAAAACTTAAAGTGGCACACAGAAAGTCTGTA AAATTATTTTACAATACCACAATAGTTTTGGTTGGTTTATTAGCAAGCATTTCATTCTGTTGTG AGATATTTCTGTTCTCTTATCATGTTGTATATGTATCTCTAATTCTCTTTTTTCTGATCAAATG AATTCAGCTCGTTTCATGGGAAGAAGGTGGCTATAAAATTTCTGATTCTCCAATGCCCCGAGGA GAGGTTGTAGTTGGTGGATACAGCATAACAAAAGGTTATTTCAACAATGAAGCAAAAACAAATG AGGTCTACAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.20908828

Conservation Information
Conserved circRNAs	NA
PMCS	0.20908828

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							14696330-14699239(+)
						
						Potential amino acid sequence
						
							MIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSDTQRFMNICLGVPVGQGYGLTETCAGAAFSEWD
DTSVGRVGPPLPCCYVKLVSWEEGGYKISDSPMPRGEVVVGGYSITKGYFNNEAKTNEVYKVGE
KGGLTKKLFDIAYKRNLGAIEGSWFGSWAPERMIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSD
TQRFMNICLGVPVGQGYGLTETCAGAAFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYKISDSP
MPRGEVVVGGYSITKGYFNNEAKTNEVYKVGEKGGLTKKLFDIAYKRNLGAIEGSWFGSWAPER
MIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSDTQRFMNICLGVPVGQGYGLTETCAGAAFSEWD
DTSVGRVGPPLPCCYVKLVSWEEGGYKISDSPMPRGEVVVGGYSITKGYFNNEAKTNEVYKVGE
KGGLTKKLFDIAYKRNLGAIEGSWFGSWAPERMIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSD
TQRFMNICLGVPVGQGYGLTETCAGAAFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYKISDSP
MPRGEVVVGGYSITKGYFNNEAKTNEVYK(+)
						
						Sponge-miRNAs
						
							osa-miR1435 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	14696330-14699239(+)
Potential amino acid sequence	MIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSDTQRFMNICLGVPVGQGYGLTETCAGAAFSEWD DTSVGRVGPPLPCCYVKLVSWEEGGYKISDSPMPRGEVVVGGYSITKGYFNNEAKTNEVYKVGE KGGLTKKLFDIAYKRNLGAIEGSWFGSWAPERMIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSD TQRFMNICLGVPVGQGYGLTETCAGAAFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYKISDSP MPRGEVVVGGYSITKGYFNNEAKTNEVYKVGEKGGLTKKLFDIAYKRNLGAIEGSWFGSWAPER MIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSDTQRFMNICLGVPVGQGYGLTETCAGAAFSEWD DTSVGRVGPPLPCCYVKLVSWEEGGYKISDSPMPRGEVVVGGYSITKGYFNNEAKTNEVYKVGE KGGLTKKLFDIAYKRNLGAIEGSWFGSWAPERMIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSD TQRFMNICLGVPVGQGYGLTETCAGAAFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYKISDSP MPRGEVVVGGYSITKGYFNNEAKTNEVYK(+)
Sponge-miRNAs	osa-miR1435
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0317200_circ_g.8

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