Detail information of AT3G04290_circ_g.1


General Information
CircRNA Name AT3G04290_circ_g.1
ID in PlantcircBase ath_circ_019633
Alias Ath_circ_FC1804
Organism Arabidpsis thaliana
Position chr3: 1134445-1135342  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene AT3G04290
Parent gene annotation LTL1
Parent gene strand -
Alternative splicing 3_circ_ag.3 AT3G03330_circ_g.1 AT3G03330_circ_g.2 AT3G03340_circ_g.1 AT3G03340_circ_g.2 AT3G03340_circ_g.3 AT3G03340_circ_g.4 AT3G03340_circ_g.5 AT3G03340_circ_g.6 AT3G03350_circ_g.1 AT3G03350_circ_g.2 3_circ_ag.3 AT3G03350_circ_g.4 3_circ_ag.5 AT3G03380_circ_g.1 AT3G03380_circ_g.2 AT3G03380_circ_g.3 AT3G03380_circ_g.4 AT3G03380_circ_g.5 AT3G03380_circ_g.6 AT3G03380_circ_g.7 AT3G03380_circ_g.8 AT3G03380_circ_g.9 AT3G03380_circ_g.10 AT3G03380_circ_g.11 AT3G03380_circ_g.12 AT3G03380_circ_g.13 AT3G03380_circ_g.14 AT3G03380_circ_g.15 AT3G03380_circ_g.16 AT3G03380_circ_g.17 AT3G03380_circ_g.18 AT3G03420_circ_g.1 AT3G03420_circ_g.2 AT3G03420_circ_g.3 AT3G03470_circ_g.1 AT3G03520_circ_g.1 AT3G03520_circ_g.2 AT3G03520_circ_g.3 AT3G03550_circ_g.1 AT3G03560_circ_g.1 AT3G03560_circ_g.2 AT3G03560_circ_g.3 AT3G03560_circ_g.4 AT3G03560_circ_g.5 AT3G03560_circ_g.6 AT3G03560_circ_g.7 AT3G03560_circ_g.8 AT3G03560_circ_g.9 AT3G03560_circ_g.10 AT3G03560_circ_g.11 AT3G03560_circ_g.12 AT3G03560_circ_g.13 AT3G03570_circ_g.1 AT3G03610_circ_g.1 AT3G03610_circ_g.2 AT3G03610_circ_g.3 AT3G03630_circ_g.1 AT3G03640_circ_g.1 AT3G03640_circ_g.2 AT3G03680_circ_g.1 AT3G03680_circ_g.2 AT3G03690_circ_g.1 AT3G03690_circ_g.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 AT3G03710_circ_g.1 AT3G03710_circ_g.2 AT3G03710_circ_g.3 3_circ_ag.4 AT3G03710_circ_g.5 AT3G03710_circ_g.6 AT3G03710_circ_g.7 AT3G03710_circ_g.8 AT3G03720_circ_g.1 AT3G03720_circ_g.2 AT3G03720_circ_g.3 AT3G03720_circ_g.4 AT3G03720_circ_g.5 AT3G03720_circ_g.6 AT3G03770_circ_g.1 AT3G03770_circ_g.2 AT3G03770_circ_g.3 AT3G03770_circ_g.4 AT3G03773_circ_g.1 AT3G03773_circ_g.2 AT3G03773_circ_g.3 AT3G03780_circ_g.1 AT3G03780_circ_g.2 AT3G03780_circ_g.3 AT3G03780_circ_g.4 AT3G03780_circ_g.5 AT3G03780_circ_g.6 AT3G03780_circ_g.7 AT3G03780_circ_g.8 AT3G03790_circ_g.1 AT3G03790_circ_g.2 AT3G03790_circ_g.3 AT3G03790_circ_g.4 AT3G03790_circ_g.5 AT3G03790_circ_g.6 AT3G03790_circ_g.7 AT3G03810_circ_g.1 AT3G03810_circ_g.2 AT3G03810_circ_g.3 AT3G03860_circ_g.1 AT3G03900_circ_g.1 AT3G03900_circ_g.2 AT3G03920_circ_g.1 AT3G03920_circ_g.2 AT3G03920_circ_g.3 AT3G03920_circ_g.4 AT3G03920_circ_g.5 AT3G03940_circ_g.1 AT3G03940_circ_g.2 AT3G03940_circ_g.3 AT3G03940_circ_g.4 AT3G03940_circ_g.5 AT3G03940_circ_g.6 AT3G03940_circ_g.7 AT3G03940_circ_g.8 AT3G03940_circ_g.9 AT3G03940_circ_g.10 AT3G03940_circ_g.11 AT3G03950_circ_g.1 AT3G03950_circ_g.2 AT3G03950_circ_g.3 AT3G03960_circ_g.1 AT3G03960_circ_g.2 AT3G03960_circ_g.3 AT3G03960_circ_g.4 AT3G03960_circ_g.5 AT3G03960_circ_g.6 AT3G03960_circ_g.7 AT3G03960_circ_g.8 AT3G03960_circ_g.9 AT3G04020_circ_g.1 AT3G04020_circ_g.2 AT3G04020_circ_g.3 AT3G04080_circ_g.1 AT3G04080_circ_g.2 AT3G04080_circ_g.3 AT3G04080_circ_g.4 AT3G04080_circ_g.5 AT3G04090_circ_g.1 AT3G04120_circ_g.1 AT3G04120_circ_g.2 AT3G04120_circ_g.3 AT3G04120_circ_g.4 AT3G04120_circ_g.5 AT3G04120_circ_g.6 AT3G04120_circ_g.7 AT3G04120_circ_g.8 AT3G04120_circ_g.9 AT3G04120_circ_g.10 AT3G04120_circ_g.11 AT3G04120_circ_g.12 AT3G04120_circ_g.13 AT3G04120_circ_g.14 AT3G04120_circ_g.15 AT3G04120_circ_g.16 AT3G04160_circ_g.1 AT3G04220_circ_g.1 AT3G04240_circ_g.1 AT3G04240_circ_g.2 AT3G04240_circ_g.3 AT3G04240_circ_g.4 AT3G04240_circ_g.5 AT3G04240_circ_g.6 AT3G04240_circ_g.7 AT3G04240_circ_g.8 AT3G04240_circ_g.9 AT3G04240_circ_g.10 AT3G04240_circ_g.11 AT3G04240_circ_g.12 AT3G04240_circ_g.13 AT3G04240_circ_g.14 AT3G04240_circ_g.15 AT3G04260_circ_g.1 AT3G04260_circ_g.2 AT3G04260_circ_g.3 AT3G04260_circ_g.4 AT3G04290_circ_g.2 AT3G04340_circ_g.1 AT3G04340_circ_g.2 AT3G04340_circ_g.3 AT3G04340_circ_g.4 AT3G04340_circ_g.5 AT3G04340_circ_g.6 AT3G04340_circ_g.7 AT3G04340_circ_g.8 AT3G04340_circ_g.9 AT3G04380_circ_g.1 AT3G04400_circ_g.1 AT3G04400_circ_g.2 AT3G04400_circ_g.3 AT3G04400_circ_g.4 AT3G04420_circ_g.1 AT3G04420_circ_g.2
Support reads 231/4
Tissues inflorescences, whole_plant/seedlings
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G04290.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACTAGCTGTTGTGTAGCTTCTGGTCCGATCAATGCACTCACTCGTAGCTGGTACTGTTCGAA
GTATTCCATCTGTTTAGAAATTCTAATTATGTTTACcaaattgttcaggattagatagataatc
catgttcatttgataggcattggctgctacaaacacgtcttgaccaatttcagcattgactgat
gcgatcaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 496
Transcript exons: 1134445-1134697,1135100-1135342
CAAATTGTTCAGGATTAGATAGATAATCCATGTTCATTTGATAGGCATTGGCTGCTACAAACAC
GTCTTGACCAATTTCAGCATTGACTGATGCGATCAAATCAACTAATTGCGGATTGAACAAAGCG
GCTGCTGTTTGGAGGGCGCCATAGCACTCGCCATTGCGGCTATGCTGAGCCAGCTCCGCGGGAG
CACATCCCATTGCACCAGTTCCAGTTACCAAAACTCGTCTTGCACCCAGTTCGTAGAGTTTTCT
GAGAATCTTTCCGTATTCGGAAATGAGATACACAACGTAGTCTGGTAACGCGTATTGGCGAGAA
CGAGCTGAAAACGGAATTAGATAATAATTGTTGACGAAATCATTACCACCGAGTGTAATTAGGA
CAAGAGCTTGGTTAACTAGCTGTTGTGTAGCTTCTGGTCCGATCAATGCACTCACTCGTAGCTG
GTACTGTTCGAAGTATTCCATCTGTTTAGAAATTCTAATTATGTTTAC

Genomic sequence CAAATTGTTCAGGATTAGATAGATAATCCATGTTCATTTGATAGGCATTGGCTGCTACAAACAC
GTCTTGACCAATTTCAGCATTGACTGATGCGATCAAATCAACTAATTGCGGATTGAACAAAGCG
GCTGCTGTTTGGAGGGCGCCATAGCACTCGCCATTGCGGCTATGCTGAGCCAGCTCCGCGGGAG
CACATCCCATTGCACCAGTTCCAGTTACCAAAACTCGTCTTGCACCCAGTTCGTAGAGTTTCTA
TTTCAATGAAGACCAAACAAGAAAACAAATGTAATCATACACCATCAAAGGAGAACTAAGTACA
TCATTAAGTGAACAAAGAAAAAGCTATTAAATTTGCCCCATCATTTTTTGTACGTACGTTATGA
ACTTATGATCACTCTATTCAAGAGAATCATGACATTAACTATGTACGTAGTGACATAACGAAAG
TAATTATTTGAGAGTTCACATATTAAATGCAATTTCCTTTAGTGAGGCAACAAGTTAATAAACT
AAATGGTATTGTAGCAAAAATTAGTACAAGATTGCATGATTTAAGGTTATTTCGTGGTAAGCCC
CCAATTTGTTACATGACATATGTACAAATTTAGTATATATACGTTAAAAAGAAGACAATATATA
ATTTTTTAAACTTACTCTGAGAATCTTTCCGTATTCGGAAATGAGATACACAACGTAGTCTGGT
AACGCGTATTGGCGAGAACGAGCTGAAAACGGAATTAGATAATAATTGTTGACGAAATCATTAC
CACCGAGTGTAATTAGGACAAGAGCTTGGTTAACTAGCTGTTGTGTAGCTTCTGGTCCGATCAA
TGCACTCACTCGTAGCTGGTACTGTTCGAAGTATTCCATCTGTTTAGAAATTCTAATTATGTTT
AC
Conservation Information
Conserved circRNAs NA
PMCS 0.328751518
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA