Plant Circular RNA Database

Detail information of AT3G04260_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT3G04260_circ_g.1
					
						ID in PlantcircBase
						ath_circ_019629
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr3: 1124082-1126881  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						KNIFE, PcircRNA_finder, circRNA_finder, find_circ
					
						Parent gene
						
							AT3G04260						
					
						Parent gene annotation
						
							Plastid transcriptionally active 3
							
						Parent gene strand
						-
					
						Alternative splicing
						
							3_circ_ag.3 AT3G03330_circ_g.1 AT3G03330_circ_g.2 AT3G03340_circ_g.1 AT3G03340_circ_g.2 AT3G03340_circ_g.3 AT3G03340_circ_g.4 AT3G03340_circ_g.5 AT3G03340_circ_g.6 AT3G03350_circ_g.1 AT3G03350_circ_g.2 3_circ_ag.3 AT3G03350_circ_g.4 3_circ_ag.5 AT3G03380_circ_g.1 AT3G03380_circ_g.2 AT3G03380_circ_g.3 AT3G03380_circ_g.4 AT3G03380_circ_g.5 AT3G03380_circ_g.6 AT3G03380_circ_g.7 AT3G03380_circ_g.8 AT3G03380_circ_g.9 AT3G03380_circ_g.10 AT3G03380_circ_g.11 AT3G03380_circ_g.12 AT3G03380_circ_g.13 AT3G03380_circ_g.14 AT3G03380_circ_g.15 AT3G03380_circ_g.16 AT3G03380_circ_g.17 AT3G03380_circ_g.18 AT3G03420_circ_g.1 AT3G03420_circ_g.2 AT3G03420_circ_g.3 AT3G03470_circ_g.1 AT3G03520_circ_g.1 AT3G03520_circ_g.2 AT3G03520_circ_g.3 AT3G03550_circ_g.1 AT3G03560_circ_g.1 AT3G03560_circ_g.2 AT3G03560_circ_g.3 AT3G03560_circ_g.4 AT3G03560_circ_g.5 AT3G03560_circ_g.6 AT3G03560_circ_g.7 AT3G03560_circ_g.8 AT3G03560_circ_g.9 AT3G03560_circ_g.10 AT3G03560_circ_g.11 AT3G03560_circ_g.12 AT3G03560_circ_g.13 AT3G03570_circ_g.1 AT3G03610_circ_g.1 AT3G03610_circ_g.2 AT3G03610_circ_g.3 AT3G03630_circ_g.1 AT3G03640_circ_g.1 AT3G03640_circ_g.2 AT3G03680_circ_g.1 AT3G03680_circ_g.2 AT3G03690_circ_g.1 AT3G03690_circ_g.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 AT3G03710_circ_g.1 AT3G03710_circ_g.2 AT3G03710_circ_g.3 3_circ_ag.4 AT3G03710_circ_g.5 AT3G03710_circ_g.6 AT3G03710_circ_g.7 AT3G03710_circ_g.8 AT3G03720_circ_g.1 AT3G03720_circ_g.2 AT3G03720_circ_g.3 AT3G03720_circ_g.4 AT3G03720_circ_g.5 AT3G03720_circ_g.6 AT3G03770_circ_g.1 AT3G03770_circ_g.2 AT3G03770_circ_g.3 AT3G03770_circ_g.4 AT3G03773_circ_g.1 AT3G03773_circ_g.2 AT3G03773_circ_g.3 AT3G03780_circ_g.1 AT3G03780_circ_g.2 AT3G03780_circ_g.3 AT3G03780_circ_g.4 AT3G03780_circ_g.5 AT3G03780_circ_g.6 AT3G03780_circ_g.7 AT3G03780_circ_g.8 AT3G03790_circ_g.1 AT3G03790_circ_g.2 AT3G03790_circ_g.3 AT3G03790_circ_g.4 AT3G03790_circ_g.5 AT3G03790_circ_g.6 AT3G03790_circ_g.7 AT3G03810_circ_g.1 AT3G03810_circ_g.2 AT3G03810_circ_g.3 AT3G03860_circ_g.1 AT3G03900_circ_g.1 AT3G03900_circ_g.2 AT3G03920_circ_g.1 AT3G03920_circ_g.2 AT3G03920_circ_g.3 AT3G03920_circ_g.4 AT3G03920_circ_g.5 AT3G03940_circ_g.1 AT3G03940_circ_g.2 AT3G03940_circ_g.3 AT3G03940_circ_g.4 AT3G03940_circ_g.5 AT3G03940_circ_g.6 AT3G03940_circ_g.7 AT3G03940_circ_g.8 AT3G03940_circ_g.9 AT3G03940_circ_g.10 AT3G03940_circ_g.11 AT3G03950_circ_g.1 AT3G03950_circ_g.2 AT3G03950_circ_g.3 AT3G03960_circ_g.1 AT3G03960_circ_g.2 AT3G03960_circ_g.3 AT3G03960_circ_g.4 AT3G03960_circ_g.5 AT3G03960_circ_g.6 AT3G03960_circ_g.7 AT3G03960_circ_g.8 AT3G03960_circ_g.9 AT3G04020_circ_g.1 AT3G04020_circ_g.2 AT3G04020_circ_g.3 AT3G04080_circ_g.1 AT3G04080_circ_g.2 AT3G04080_circ_g.3 AT3G04080_circ_g.4 AT3G04080_circ_g.5 AT3G04090_circ_g.1 AT3G04120_circ_g.1 AT3G04120_circ_g.2 AT3G04120_circ_g.3 AT3G04120_circ_g.4 AT3G04120_circ_g.5 AT3G04120_circ_g.6 AT3G04120_circ_g.7 AT3G04120_circ_g.8 AT3G04120_circ_g.9 AT3G04120_circ_g.10 AT3G04120_circ_g.11 AT3G04120_circ_g.12 AT3G04120_circ_g.13 AT3G04120_circ_g.14 AT3G04120_circ_g.15 AT3G04120_circ_g.16 AT3G04160_circ_g.1 AT3G04220_circ_g.1 AT3G04240_circ_g.1 AT3G04240_circ_g.2 AT3G04240_circ_g.3 AT3G04240_circ_g.4 AT3G04240_circ_g.5 AT3G04240_circ_g.6 AT3G04240_circ_g.7 AT3G04240_circ_g.8 AT3G04240_circ_g.9 AT3G04240_circ_g.10 AT3G04240_circ_g.11 AT3G04240_circ_g.12 AT3G04240_circ_g.13 AT3G04240_circ_g.14 AT3G04240_circ_g.15 AT3G04260_circ_g.2 AT3G04260_circ_g.3 AT3G04260_circ_g.4 AT3G04290_circ_g.1 AT3G04290_circ_g.2 AT3G04340_circ_g.1 AT3G04340_circ_g.2 AT3G04340_circ_g.3 AT3G04340_circ_g.4 AT3G04340_circ_g.5 AT3G04340_circ_g.6 AT3G04340_circ_g.7 AT3G04340_circ_g.8 AT3G04340_circ_g.9 AT3G04380_circ_g.1 AT3G04400_circ_g.1 AT3G04400_circ_g.2 AT3G04400_circ_g.3 AT3G04400_circ_g.4 AT3G04420_circ_g.1 AT3G04420_circ_g.2 						
					
						Support reads
						9
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT3G04260.1:9

General Information
CircRNA Name	AT3G04260_circ_g.1
ID in PlantcircBase	ath_circ_019629
Alias	NA
Organism	Arabidpsis thaliana
Position	chr3: 1124082-1126881 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene	AT3G04260
Parent gene annotation	Plastid transcriptionally active 3
Parent gene strand	-
Alternative splicing	3_circ_ag.3 AT3G03330_circ_g.1 AT3G03330_circ_g.2 AT3G03340_circ_g.1 AT3G03340_circ_g.2 AT3G03340_circ_g.3 AT3G03340_circ_g.4 AT3G03340_circ_g.5 AT3G03340_circ_g.6 AT3G03350_circ_g.1 AT3G03350_circ_g.2 3_circ_ag.3 AT3G03350_circ_g.4 3_circ_ag.5 AT3G03380_circ_g.1 AT3G03380_circ_g.2 AT3G03380_circ_g.3 AT3G03380_circ_g.4 AT3G03380_circ_g.5 AT3G03380_circ_g.6 AT3G03380_circ_g.7 AT3G03380_circ_g.8 AT3G03380_circ_g.9 AT3G03380_circ_g.10 AT3G03380_circ_g.11 AT3G03380_circ_g.12 AT3G03380_circ_g.13 AT3G03380_circ_g.14 AT3G03380_circ_g.15 AT3G03380_circ_g.16 AT3G03380_circ_g.17 AT3G03380_circ_g.18 AT3G03420_circ_g.1 AT3G03420_circ_g.2 AT3G03420_circ_g.3 AT3G03470_circ_g.1 AT3G03520_circ_g.1 AT3G03520_circ_g.2 AT3G03520_circ_g.3 AT3G03550_circ_g.1 AT3G03560_circ_g.1 AT3G03560_circ_g.2 AT3G03560_circ_g.3 AT3G03560_circ_g.4 AT3G03560_circ_g.5 AT3G03560_circ_g.6 AT3G03560_circ_g.7 AT3G03560_circ_g.8 AT3G03560_circ_g.9 AT3G03560_circ_g.10 AT3G03560_circ_g.11 AT3G03560_circ_g.12 AT3G03560_circ_g.13 AT3G03570_circ_g.1 AT3G03610_circ_g.1 AT3G03610_circ_g.2 AT3G03610_circ_g.3 AT3G03630_circ_g.1 AT3G03640_circ_g.1 AT3G03640_circ_g.2 AT3G03680_circ_g.1 AT3G03680_circ_g.2 AT3G03690_circ_g.1 AT3G03690_circ_g.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 AT3G03710_circ_g.1 AT3G03710_circ_g.2 AT3G03710_circ_g.3 3_circ_ag.4 AT3G03710_circ_g.5 AT3G03710_circ_g.6 AT3G03710_circ_g.7 AT3G03710_circ_g.8 AT3G03720_circ_g.1 AT3G03720_circ_g.2 AT3G03720_circ_g.3 AT3G03720_circ_g.4 AT3G03720_circ_g.5 AT3G03720_circ_g.6 AT3G03770_circ_g.1 AT3G03770_circ_g.2 AT3G03770_circ_g.3 AT3G03770_circ_g.4 AT3G03773_circ_g.1 AT3G03773_circ_g.2 AT3G03773_circ_g.3 AT3G03780_circ_g.1 AT3G03780_circ_g.2 AT3G03780_circ_g.3 AT3G03780_circ_g.4 AT3G03780_circ_g.5 AT3G03780_circ_g.6 AT3G03780_circ_g.7 AT3G03780_circ_g.8 AT3G03790_circ_g.1 AT3G03790_circ_g.2 AT3G03790_circ_g.3 AT3G03790_circ_g.4 AT3G03790_circ_g.5 AT3G03790_circ_g.6 AT3G03790_circ_g.7 AT3G03810_circ_g.1 AT3G03810_circ_g.2 AT3G03810_circ_g.3 AT3G03860_circ_g.1 AT3G03900_circ_g.1 AT3G03900_circ_g.2 AT3G03920_circ_g.1 AT3G03920_circ_g.2 AT3G03920_circ_g.3 AT3G03920_circ_g.4 AT3G03920_circ_g.5 AT3G03940_circ_g.1 AT3G03940_circ_g.2 AT3G03940_circ_g.3 AT3G03940_circ_g.4 AT3G03940_circ_g.5 AT3G03940_circ_g.6 AT3G03940_circ_g.7 AT3G03940_circ_g.8 AT3G03940_circ_g.9 AT3G03940_circ_g.10 AT3G03940_circ_g.11 AT3G03950_circ_g.1 AT3G03950_circ_g.2 AT3G03950_circ_g.3 AT3G03960_circ_g.1 AT3G03960_circ_g.2 AT3G03960_circ_g.3 AT3G03960_circ_g.4 AT3G03960_circ_g.5 AT3G03960_circ_g.6 AT3G03960_circ_g.7 AT3G03960_circ_g.8 AT3G03960_circ_g.9 AT3G04020_circ_g.1 AT3G04020_circ_g.2 AT3G04020_circ_g.3 AT3G04080_circ_g.1 AT3G04080_circ_g.2 AT3G04080_circ_g.3 AT3G04080_circ_g.4 AT3G04080_circ_g.5 AT3G04090_circ_g.1 AT3G04120_circ_g.1 AT3G04120_circ_g.2 AT3G04120_circ_g.3 AT3G04120_circ_g.4 AT3G04120_circ_g.5 AT3G04120_circ_g.6 AT3G04120_circ_g.7 AT3G04120_circ_g.8 AT3G04120_circ_g.9 AT3G04120_circ_g.10 AT3G04120_circ_g.11 AT3G04120_circ_g.12 AT3G04120_circ_g.13 AT3G04120_circ_g.14 AT3G04120_circ_g.15 AT3G04120_circ_g.16 AT3G04160_circ_g.1 AT3G04220_circ_g.1 AT3G04240_circ_g.1 AT3G04240_circ_g.2 AT3G04240_circ_g.3 AT3G04240_circ_g.4 AT3G04240_circ_g.5 AT3G04240_circ_g.6 AT3G04240_circ_g.7 AT3G04240_circ_g.8 AT3G04240_circ_g.9 AT3G04240_circ_g.10 AT3G04240_circ_g.11 AT3G04240_circ_g.12 AT3G04240_circ_g.13 AT3G04240_circ_g.14 AT3G04240_circ_g.15 AT3G04260_circ_g.2 AT3G04260_circ_g.3 AT3G04260_circ_g.4 AT3G04290_circ_g.1 AT3G04290_circ_g.2 AT3G04340_circ_g.1 AT3G04340_circ_g.2 AT3G04340_circ_g.3 AT3G04340_circ_g.4 AT3G04340_circ_g.5 AT3G04340_circ_g.6 AT3G04340_circ_g.7 AT3G04340_circ_g.8 AT3G04340_circ_g.9 AT3G04380_circ_g.1 AT3G04400_circ_g.1 AT3G04400_circ_g.2 AT3G04400_circ_g.3 AT3G04400_circ_g.4 AT3G04420_circ_g.1 AT3G04420_circ_g.2
Support reads	9
Tissues	whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT3G04260.1:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCGTAGCATTCCCTTTCGAACCAGAGAGACGAACCAAAGCAATCATAGTCTCAGGAAGCGGACG
TTGGCCTGCACCTAGCTCCTTTCTCAGCGAGTGCATctcaagtgtcatacgagatgccctcttc
ccacgtttctttgttctgtttgcttcatcggattctttcaagagttggactccaatcatttgaa
gatgcttc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCAAGTGTCATACGAGATGCCCTCTTCCCACGTTTCTTTGTTCTGTTTGCTTCATCGGATTCT
TTCAAGAGTTGGACTCCAATCATTTGAAGATGCTTCTTCGCGTCAGCTGCCTTATTCTTCACTA
AATCTTCTCCTTCTGCTCGATTCTCAGTTTCTGGAACAACCACTTCTTCCTCTTCATTTTCATC
ATCATCCTCATCTCCTTCTTGTTCCTCCTCATCATCATCCTCCTCATTGTCAGCTTCTTTTGAA
ATATCTTCAATCGCTTTCTCCGATTCACCTGTAACCACTGATTCAGTCGTTTCCTTGGATTCAA
CTGAAGTTTCAATCAAGCCTTCTCCAAGAAACCGACGTTTCCAGAACTCTGTGTCTCCTTCATG
TAGCTTGATTCGACATATTAAATCGTCTACTTCTTCATCGACCTATATCAAAAACAAACTTTTT
TAGATGTAACAAGTACTAAAGATGCATGTTTACCCGAATGAAAGAAAGAGCATAAGCATAAATT
TACCTCCTCCTCTTCTTCTTCAATTGGAGGAACCCAAAGAGGTCGACCTCGAGATTTGTTTATT
CTCCTTGCTTTTTGGACACGCTGGTAAAGCACATTTCTTGTTCCATCAATTGGCAAACCCTGAG
CTTCGAGTTCTTCCTTTAACTCTGATACAACCATCTTGCTTGCTGCTTTCGGCTTCAAAAGATT
CAGTGCAGGACCTTTTATTATGTTCCGTAATCTCTCCACCACTCTCATGTAATCAGATTCTGAT
GCATCTCCTAGAACTGGAAGACCTTCACTCTGTAAGGTTCTCAAGAGCTTCCTATGGTGAACTT
TCCAATCTTCAAGGCATCTCTGTTTAAAGGATGTTTCAATAGGGTTTGAGTATATAAAACCAGA
AGCATCGGGATCTAAAGGAGTTTTCCCTCTTCGAGGTACCCAACGCTTGCGTTCACCAGTAAGT
CCCCCTTCCTCTATGTACCTGAAAATGTTTACAGAATGCGAATCTTAGTATATCAAGACAACAT
GTAAAAAAAGACACTATACTTCCTTTCTGACAATTAGAACAGAGCATTAGCGTATAACTTGTAA
ATGGGAGGATAGAATCTGATCAACAAAATTCCAGTCAAACCACGCAGAACTCAAGTTTTTACCT
CGCTAAATAATCAATCTCATAGCCAAGTTCAGCTTCTTCTTGCAATGGTTCAATCCATGAGCTG
ACTAGTGTTCGATACTTTCTGCTCATAATCATGGCTCTTGGAGGTATAGGTTGGTTATCTTTGC
GCATTGCATCTAAAGCATCAATAAGCTCAACAATTCTTCCTGGTTCAAAGGTAGAGGGTACCGT
TTAAAGACAGTAAATTTAGCATGTCCTAAAAATCAACAAATATAACGCTTAAGTATAAAAACAG
AAATAAGGGAAATAGAGAACCATAATCATAAATCGTTTTAATCATAAGTTCTCATGATCTCCCA
GAAGGTGTTCAACATATGCCTCTGCATATTATATTGACACAGGTACAAGTGTATGCATACCTTC
TCGACACAAAGCCCTGAGATACAAAGAGAGAGGATCCTCAAAATTCCCTGCATTGTGTAAAATT
ACTGTTCCTCCTTCAAAGTTTTTAAGAGCACGAAAATGTCTAATCGCTTCCTTCACGACACAAT
ATTTGGTGAAGCACTCAACTAAGAGCCTGAAATGGATCATCATACAGATCATATTAGGATTTTT
ACAATAGAACAGGTAGAAATGCAAAGTTGGTAGAAATGAGTACAATACAGAAATAATGATTCTC
TTACGCATAAGTCTTCACATTTGGCTGCACACGTTTGTGGTCCTCAACCATCATTCCAAGTAAT
TCAGCAACATCCTGAACCCTGTGATTCATGCAACAGGCTACCTGAAAATTTGTCCACTTCTAAG
AGAAATGTGTGCAATCAAAAACTCATAAGAATTACCTATCATATGACTCGGCTCTAGTGTAGGC
TTGAATCACCCAGTTATATGTCTCAGTGTCAGGCTTCATAAATACTACCAAATCAAGATTACAT
CAAGCCATGTCAAAAGCCATCAGGCAACAACTAAACCAAACAATTGAAGCGGAAATTAGCTAAG
AAAAACATACAACCTTCACCGTACTCCATATTTTCGAATGTAGCATAAGCTACCTCGGGAATCC
CACATGTAGCCTACACAACGGAAGCAAAGAAAAATGTAGTTGATGTCAACAAAAAGACTTACCA
TCTTCATTATACAAAGAAGAAGTGTGTGTATACGTTCTAAAAAAAAACATAACAAACCTGCACA
CTAAGAAGACAGTTGAAATGAAATGTTGTGGCCATTCTACCAGCTGCCTCCATTTCGTAAGAGA
TGTCTAAGGCATTAGAATGATCTCCAGCTTTGCAATCTTCTTCAATCATCAAATCATAAAGCTG
ATCTGTTGCTCTCATCCCACCTCTTGCACCCTTCAAGAAAACTTTATTCGCATCTTCCAAGTGA
TTGATCCTCATGAGCTCCTCTATAAAAGACCACAATCAAATTATAAACGATTACTCAGTAACCT
CAATCCTGGTAGACACAAGCAACAACCATTTGATTCTAACACATAGTCTTAGTAGTAAGAGAGA
ATACCAACAAGAATGAGCCAAGCTTGACGAATGTCATACTTAAGCTTTTCCATAGCGGCGAGGA
TTTCTAGGCCTCTCGTAGCATTCCCTTTCGAACCAGAGAGACGAACCAAAGCAATCATAGTCTC
AGGAAGCGGACGTTGGCCTGCACCTAGCTCCTTTCTCAGCGAGTGCAT
						
					

			
		

Sequences
Splice junction sequence	TCGTAGCATTCCCTTTCGAACCAGAGAGACGAACCAAAGCAATCATAGTCTCAGGAAGCGGACG TTGGCCTGCACCTAGCTCCTTTCTCAGCGAGTGCATctcaagtgtcatacgagatgccctcttc ccacgtttctttgttctgtttgcttcatcggattctttcaagagttggactccaatcatttgaa gatgcttc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCAAGTGTCATACGAGATGCCCTCTTCCCACGTTTCTTTGTTCTGTTTGCTTCATCGGATTCT TTCAAGAGTTGGACTCCAATCATTTGAAGATGCTTCTTCGCGTCAGCTGCCTTATTCTTCACTA AATCTTCTCCTTCTGCTCGATTCTCAGTTTCTGGAACAACCACTTCTTCCTCTTCATTTTCATC ATCATCCTCATCTCCTTCTTGTTCCTCCTCATCATCATCCTCCTCATTGTCAGCTTCTTTTGAA ATATCTTCAATCGCTTTCTCCGATTCACCTGTAACCACTGATTCAGTCGTTTCCTTGGATTCAA CTGAAGTTTCAATCAAGCCTTCTCCAAGAAACCGACGTTTCCAGAACTCTGTGTCTCCTTCATG TAGCTTGATTCGACATATTAAATCGTCTACTTCTTCATCGACCTATATCAAAAACAAACTTTTT TAGATGTAACAAGTACTAAAGATGCATGTTTACCCGAATGAAAGAAAGAGCATAAGCATAAATT TACCTCCTCCTCTTCTTCTTCAATTGGAGGAACCCAAAGAGGTCGACCTCGAGATTTGTTTATT CTCCTTGCTTTTTGGACACGCTGGTAAAGCACATTTCTTGTTCCATCAATTGGCAAACCCTGAG CTTCGAGTTCTTCCTTTAACTCTGATACAACCATCTTGCTTGCTGCTTTCGGCTTCAAAAGATT CAGTGCAGGACCTTTTATTATGTTCCGTAATCTCTCCACCACTCTCATGTAATCAGATTCTGAT GCATCTCCTAGAACTGGAAGACCTTCACTCTGTAAGGTTCTCAAGAGCTTCCTATGGTGAACTT TCCAATCTTCAAGGCATCTCTGTTTAAAGGATGTTTCAATAGGGTTTGAGTATATAAAACCAGA AGCATCGGGATCTAAAGGAGTTTTCCCTCTTCGAGGTACCCAACGCTTGCGTTCACCAGTAAGT CCCCCTTCCTCTATGTACCTGAAAATGTTTACAGAATGCGAATCTTAGTATATCAAGACAACAT GTAAAAAAAGACACTATACTTCCTTTCTGACAATTAGAACAGAGCATTAGCGTATAACTTGTAA ATGGGAGGATAGAATCTGATCAACAAAATTCCAGTCAAACCACGCAGAACTCAAGTTTTTACCT CGCTAAATAATCAATCTCATAGCCAAGTTCAGCTTCTTCTTGCAATGGTTCAATCCATGAGCTG ACTAGTGTTCGATACTTTCTGCTCATAATCATGGCTCTTGGAGGTATAGGTTGGTTATCTTTGC GCATTGCATCTAAAGCATCAATAAGCTCAACAATTCTTCCTGGTTCAAAGGTAGAGGGTACCGT TTAAAGACAGTAAATTTAGCATGTCCTAAAAATCAACAAATATAACGCTTAAGTATAAAAACAG AAATAAGGGAAATAGAGAACCATAATCATAAATCGTTTTAATCATAAGTTCTCATGATCTCCCA GAAGGTGTTCAACATATGCCTCTGCATATTATATTGACACAGGTACAAGTGTATGCATACCTTC TCGACACAAAGCCCTGAGATACAAAGAGAGAGGATCCTCAAAATTCCCTGCATTGTGTAAAATT ACTGTTCCTCCTTCAAAGTTTTTAAGAGCACGAAAATGTCTAATCGCTTCCTTCACGACACAAT ATTTGGTGAAGCACTCAACTAAGAGCCTGAAATGGATCATCATACAGATCATATTAGGATTTTT ACAATAGAACAGGTAGAAATGCAAAGTTGGTAGAAATGAGTACAATACAGAAATAATGATTCTC TTACGCATAAGTCTTCACATTTGGCTGCACACGTTTGTGGTCCTCAACCATCATTCCAAGTAAT TCAGCAACATCCTGAACCCTGTGATTCATGCAACAGGCTACCTGAAAATTTGTCCACTTCTAAG AGAAATGTGTGCAATCAAAAACTCATAAGAATTACCTATCATATGACTCGGCTCTAGTGTAGGC TTGAATCACCCAGTTATATGTCTCAGTGTCAGGCTTCATAAATACTACCAAATCAAGATTACAT CAAGCCATGTCAAAAGCCATCAGGCAACAACTAAACCAAACAATTGAAGCGGAAATTAGCTAAG AAAAACATACAACCTTCACCGTACTCCATATTTTCGAATGTAGCATAAGCTACCTCGGGAATCC CACATGTAGCCTACACAACGGAAGCAAAGAAAAATGTAGTTGATGTCAACAAAAAGACTTACCA TCTTCATTATACAAAGAAGAAGTGTGTGTATACGTTCTAAAAAAAAACATAACAAACCTGCACA CTAAGAAGACAGTTGAAATGAAATGTTGTGGCCATTCTACCAGCTGCCTCCATTTCGTAAGAGA TGTCTAAGGCATTAGAATGATCTCCAGCTTTGCAATCTTCTTCAATCATCAAATCATAAAGCTG ATCTGTTGCTCTCATCCCACCTCTTGCACCCTTCAAGAAAACTTTATTCGCATCTTCCAAGTGA TTGATCCTCATGAGCTCCTCTATAAAAGACCACAATCAAATTATAAACGATTACTCAGTAACCT CAATCCTGGTAGACACAAGCAACAACCATTTGATTCTAACACATAGTCTTAGTAGTAAGAGAGA ATACCAACAAGAATGAGCCAAGCTTGACGAATGTCATACTTAAGCTTTTCCATAGCGGCGAGGA TTTCTAGGCCTCTCGTAGCATTCCCTTTCGAACCAGAGAGACGAACCAAAGCAATCATAGTCTC AGGAAGCGGACGTTGGCCTGCACCTAGCTCCTTTCTCAGCGAGTGCAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.148117574

Conservation Information
Conserved circRNAs	NA
PMCS	0.148117574

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							1126882-1124084(-)
						
					

						Potential amino acid sequence
						
							MHSLRKELGAGQRPLPETMIALVRLSGSKGNATRGLEILAAMEKLKYDIRQAWLILVEELMRIN
HLEDANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHSNALDISYEMEAAGRMATTFHFNCLLS
VQATCGIPEVAYATFENMEYGEVFMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKR
VQPNVKTYALLVECFTKYCVVKEAIRHFRALKNFEGGTVILHNAGNFEDPLSLYLRALCREGRI
VELIDALDAMRKDNQPIPPRAMIMSRKYRTLVSSWIEPLQEEAELGYEIDYLARYIEEGGLTGE
RKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRCLEDWKVHHRKLLRTLQSEGLPVLGDASESD
YMRVVERLRNIIKGPALNLLKPKAASKMVVSELKEELEAQGLPIDGTRNVLYQRVQKARRINKS
RGRPLWVPPIEEEEEEVDEEVDDLICRIKLHEGDTEFWKRRFLGEGLIETSVESKETTESVVTG
ESEKAIEDISKEADNEEDDDEEEQEGDEDDDENEEEEVVVPETENRAEGEDLVKNKAADAKKHL
QMIGVQLLKESDEANRTKKRGKRASRMTLEMHSLRKELGAGQRPLPETMIALVRLSGSKGNATR
GLEILAAMEKLKYDIRQAWLILVEELMRINHLEDANKVFLKGARGGMRATDQLYDLMIEEDCKA
GDHSNALDISYEMEAAGRMATTFHFNCLLSVQATCGIPEVAYATFENMEYGEVFMKPDTETYNW
VIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAIRHFRALKNF
EGGTVILHNAGNFEDPLSLYLRALCREGRIVELIDALDAMRKDNQPIPPRAMIMSRKYRTLVSS
WIEPLQEEAELGYEIDYLARYIEEGGLTGERKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRC
LEDWKVHHRKLLRTLQSEGLPVLGDASESDYMRVVERLRNIIKGPALNLLKPKAASKMVVSELK
EELEAQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDDLICRIKLHEGD
TEFWKRRFLGEGLIETSVESKETTESVVTGESEKAIEDISKEADNEEDDDEEEQEGDEDDDENE
EEEVVVPETENRAEGEDLVKNKAADAKKHLQMIGVQLLKESDEANRTKKRGKRASRMTLEMHSL
RKELGAGQRPLPETMIALVRLSGSKGNATRGLEILAAMEKLKYDIRQAWLILVEELMRINHLED
ANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHSNALDISYEMEAAGRMATTFHFNCLLSVQAT
CGIPEVAYATFENMEYGEVFMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPN
VKTYALLVECFTKYCVVKEAIRHFRALKNFEGGTVILHNAGNFEDPLSLYLRALCREGRIVELI
DALDAMRKDNQPIPPRAMIMSRKYRTLVSSWIEPLQEEAELGYEIDYLARYIEEGGLTGERKRW
VPRRGKTPLDPDASGFIYSNPIETSFKQRCLEDWKVHHRKLLRTLQSEGLPVLGDASESDYMRV
VERLRNIIKGPALNLLKPKAASKMVVSELKEELEAQGLPIDGTRNVLYQRVQKARRINKSRGRP
LWVPPIEEEEEEVDEEVDDLICRIKLHEGDTEFWKRRFLGEGLIETSVESKETTESVVTGESEK
AIEDISKEADNEEDDDEEEQEGDEDDDENEEEEVVVPETENRAEGEDLVKNKAADAKKHLQMIG
VQLLKESDEANRTKKRGKRASRMTLEMHSLRKELGAGQRPLPETMIALVRLSGSKGNATRGLEI
LAAMEKLKYDIRQAWLILVEELMRINHLEDANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHS
NALDISYEMEAAGRMATTFHFNCLLSVQATCGIPEVAYATFENMEYGEVFMKPDTETYNWVIQA
YTRAESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAIRHFRALKNFEGGT
VILHNAGNFEDPLSLYLRALCREGRIVELIDALDAMRKDNQPIPPRAMIMSRKYRTLVSSWIEP
LQEEAELGYEIDYLARYIEEGGLTGERKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRCLEDW
KVHHRKLLRTLQSEGLPVLGDASESDYMRVVERLRNIIKGPALNLLKPKAASKMVVSELKEELE
AQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDDLICRIKLHEGDTEFW
KRRFLGEGLIETSVESKETTESVVTGESEKAIEDISKEADNEEDDDEEEQEGDEDDDENEEEEV
VVPETENRAEGEDLVKNKAADAKKHLQMIGVQLLKESDEANRTKKRGKRASRMTLE(-)
						
					

						Sponge-miRNAs
						
							ath-miR5658 						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	1126882-1124084(-)
Potential amino acid sequence	MHSLRKELGAGQRPLPETMIALVRLSGSKGNATRGLEILAAMEKLKYDIRQAWLILVEELMRIN HLEDANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHSNALDISYEMEAAGRMATTFHFNCLLS VQATCGIPEVAYATFENMEYGEVFMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKR VQPNVKTYALLVECFTKYCVVKEAIRHFRALKNFEGGTVILHNAGNFEDPLSLYLRALCREGRI VELIDALDAMRKDNQPIPPRAMIMSRKYRTLVSSWIEPLQEEAELGYEIDYLARYIEEGGLTGE RKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRCLEDWKVHHRKLLRTLQSEGLPVLGDASESD YMRVVERLRNIIKGPALNLLKPKAASKMVVSELKEELEAQGLPIDGTRNVLYQRVQKARRINKS RGRPLWVPPIEEEEEEVDEEVDDLICRIKLHEGDTEFWKRRFLGEGLIETSVESKETTESVVTG ESEKAIEDISKEADNEEDDDEEEQEGDEDDDENEEEEVVVPETENRAEGEDLVKNKAADAKKHL QMIGVQLLKESDEANRTKKRGKRASRMTLEMHSLRKELGAGQRPLPETMIALVRLSGSKGNATR GLEILAAMEKLKYDIRQAWLILVEELMRINHLEDANKVFLKGARGGMRATDQLYDLMIEEDCKA GDHSNALDISYEMEAAGRMATTFHFNCLLSVQATCGIPEVAYATFENMEYGEVFMKPDTETYNW VIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAIRHFRALKNF EGGTVILHNAGNFEDPLSLYLRALCREGRIVELIDALDAMRKDNQPIPPRAMIMSRKYRTLVSS WIEPLQEEAELGYEIDYLARYIEEGGLTGERKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRC LEDWKVHHRKLLRTLQSEGLPVLGDASESDYMRVVERLRNIIKGPALNLLKPKAASKMVVSELK EELEAQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDDLICRIKLHEGD TEFWKRRFLGEGLIETSVESKETTESVVTGESEKAIEDISKEADNEEDDDEEEQEGDEDDDENE EEEVVVPETENRAEGEDLVKNKAADAKKHLQMIGVQLLKESDEANRTKKRGKRASRMTLEMHSL RKELGAGQRPLPETMIALVRLSGSKGNATRGLEILAAMEKLKYDIRQAWLILVEELMRINHLED ANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHSNALDISYEMEAAGRMATTFHFNCLLSVQAT CGIPEVAYATFENMEYGEVFMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPN VKTYALLVECFTKYCVVKEAIRHFRALKNFEGGTVILHNAGNFEDPLSLYLRALCREGRIVELI DALDAMRKDNQPIPPRAMIMSRKYRTLVSSWIEPLQEEAELGYEIDYLARYIEEGGLTGERKRW VPRRGKTPLDPDASGFIYSNPIETSFKQRCLEDWKVHHRKLLRTLQSEGLPVLGDASESDYMRV VERLRNIIKGPALNLLKPKAASKMVVSELKEELEAQGLPIDGTRNVLYQRVQKARRINKSRGRP LWVPPIEEEEEEVDEEVDDLICRIKLHEGDTEFWKRRFLGEGLIETSVESKETTESVVTGESEK AIEDISKEADNEEDDDEEEQEGDEDDDENEEEEVVVPETENRAEGEDLVKNKAADAKKHLQMIG VQLLKESDEANRTKKRGKRASRMTLEMHSLRKELGAGQRPLPETMIALVRLSGSKGNATRGLEI LAAMEKLKYDIRQAWLILVEELMRINHLEDANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHS NALDISYEMEAAGRMATTFHFNCLLSVQATCGIPEVAYATFENMEYGEVFMKPDTETYNWVIQA YTRAESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAIRHFRALKNFEGGT VILHNAGNFEDPLSLYLRALCREGRIVELIDALDAMRKDNQPIPPRAMIMSRKYRTLVSSWIEP LQEEAELGYEIDYLARYIEEGGLTGERKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRCLEDW KVHHRKLLRTLQSEGLPVLGDASESDYMRVVERLRNIIKGPALNLLKPKAASKMVVSELKEELE AQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDDLICRIKLHEGDTEFW KRRFLGEGLIETSVESKETTESVVTGESEKAIEDISKEADNEEDDDEEEQEGDEDDDENEEEEV VVPETENRAEGEDLVKNKAADAKKHLQMIGVQLLKESDEANRTKKRGKRASRMTLE(-)
Sponge-miRNAs	ath-miR5658
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT3G04260_circ_g.1

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