Detail information of AT3G04340_circ_g.8


General Information
CircRNA Name AT3G04340_circ_g.8
ID in PlantcircBase ath_circ_019642
Alias 3:1150879-1151995
Organism Arabidpsis thaliana
Position chr3: 1150879-1151995  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G04340
Parent gene annotation Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, ch
loroplastic
Parent gene strand -
Alternative splicing 3_circ_ag.3 AT3G03330_circ_g.1 AT3G03330_circ_g.2 AT3G03340_circ_g.1 AT3G03340_circ_g.2 AT3G03340_circ_g.3 AT3G03340_circ_g.4 AT3G03340_circ_g.5 AT3G03340_circ_g.6 AT3G03350_circ_g.1 AT3G03350_circ_g.2 3_circ_ag.3 AT3G03350_circ_g.4 3_circ_ag.5 AT3G03380_circ_g.1 AT3G03380_circ_g.2 AT3G03380_circ_g.3 AT3G03380_circ_g.4 AT3G03380_circ_g.5 AT3G03380_circ_g.6 AT3G03380_circ_g.7 AT3G03380_circ_g.8 AT3G03380_circ_g.9 AT3G03380_circ_g.10 AT3G03380_circ_g.11 AT3G03380_circ_g.12 AT3G03380_circ_g.13 AT3G03380_circ_g.14 AT3G03380_circ_g.15 AT3G03380_circ_g.16 AT3G03380_circ_g.17 AT3G03380_circ_g.18 AT3G03420_circ_g.1 AT3G03420_circ_g.2 AT3G03420_circ_g.3 AT3G03470_circ_g.1 AT3G03520_circ_g.1 AT3G03520_circ_g.2 AT3G03520_circ_g.3 AT3G03550_circ_g.1 AT3G03560_circ_g.1 AT3G03560_circ_g.2 AT3G03560_circ_g.3 AT3G03560_circ_g.4 AT3G03560_circ_g.5 AT3G03560_circ_g.6 AT3G03560_circ_g.7 AT3G03560_circ_g.8 AT3G03560_circ_g.9 AT3G03560_circ_g.10 AT3G03560_circ_g.11 AT3G03560_circ_g.12 AT3G03560_circ_g.13 AT3G03570_circ_g.1 AT3G03610_circ_g.1 AT3G03610_circ_g.2 AT3G03610_circ_g.3 AT3G03630_circ_g.1 AT3G03640_circ_g.1 AT3G03640_circ_g.2 AT3G03680_circ_g.1 AT3G03680_circ_g.2 AT3G03690_circ_g.1 AT3G03690_circ_g.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 AT3G03710_circ_g.1 AT3G03710_circ_g.2 AT3G03710_circ_g.3 3_circ_ag.4 AT3G03710_circ_g.5 AT3G03710_circ_g.6 AT3G03710_circ_g.7 AT3G03710_circ_g.8 AT3G03720_circ_g.1 AT3G03720_circ_g.2 AT3G03720_circ_g.3 AT3G03720_circ_g.4 AT3G03720_circ_g.5 AT3G03720_circ_g.6 AT3G03770_circ_g.1 AT3G03770_circ_g.2 AT3G03770_circ_g.3 AT3G03770_circ_g.4 AT3G03773_circ_g.1 AT3G03773_circ_g.2 AT3G03773_circ_g.3 AT3G03780_circ_g.1 AT3G03780_circ_g.2 AT3G03780_circ_g.3 AT3G03780_circ_g.4 AT3G03780_circ_g.5 AT3G03780_circ_g.6 AT3G03780_circ_g.7 AT3G03780_circ_g.8 AT3G03790_circ_g.1 AT3G03790_circ_g.2 AT3G03790_circ_g.3 AT3G03790_circ_g.4 AT3G03790_circ_g.5 AT3G03790_circ_g.6 AT3G03790_circ_g.7 AT3G03810_circ_g.1 AT3G03810_circ_g.2 AT3G03810_circ_g.3 AT3G03860_circ_g.1 AT3G03900_circ_g.1 AT3G03900_circ_g.2 AT3G03920_circ_g.1 AT3G03920_circ_g.2 AT3G03920_circ_g.3 AT3G03920_circ_g.4 AT3G03920_circ_g.5 AT3G03940_circ_g.1 AT3G03940_circ_g.2 AT3G03940_circ_g.3 AT3G03940_circ_g.4 AT3G03940_circ_g.5 AT3G03940_circ_g.6 AT3G03940_circ_g.7 AT3G03940_circ_g.8 AT3G03940_circ_g.9 AT3G03940_circ_g.10 AT3G03940_circ_g.11 AT3G03950_circ_g.1 AT3G03950_circ_g.2 AT3G03950_circ_g.3 AT3G03960_circ_g.1 AT3G03960_circ_g.2 AT3G03960_circ_g.3 AT3G03960_circ_g.4 AT3G03960_circ_g.5 AT3G03960_circ_g.6 AT3G03960_circ_g.7 AT3G03960_circ_g.8 AT3G03960_circ_g.9 AT3G04020_circ_g.1 AT3G04020_circ_g.2 AT3G04020_circ_g.3 AT3G04080_circ_g.1 AT3G04080_circ_g.2 AT3G04080_circ_g.3 AT3G04080_circ_g.4 AT3G04080_circ_g.5 AT3G04090_circ_g.1 AT3G04120_circ_g.1 AT3G04120_circ_g.2 AT3G04120_circ_g.3 AT3G04120_circ_g.4 AT3G04120_circ_g.5 AT3G04120_circ_g.6 AT3G04120_circ_g.7 AT3G04120_circ_g.8 AT3G04120_circ_g.9 AT3G04120_circ_g.10 AT3G04120_circ_g.11 AT3G04120_circ_g.12 AT3G04120_circ_g.13 AT3G04120_circ_g.14 AT3G04120_circ_g.15 AT3G04120_circ_g.16 AT3G04160_circ_g.1 AT3G04220_circ_g.1 AT3G04240_circ_g.1 AT3G04240_circ_g.2 AT3G04240_circ_g.3 AT3G04240_circ_g.4 AT3G04240_circ_g.5 AT3G04240_circ_g.6 AT3G04240_circ_g.7 AT3G04240_circ_g.8 AT3G04240_circ_g.9 AT3G04240_circ_g.10 AT3G04240_circ_g.11 AT3G04240_circ_g.12 AT3G04240_circ_g.13 AT3G04240_circ_g.14 AT3G04240_circ_g.15 AT3G04260_circ_g.1 AT3G04260_circ_g.2 AT3G04260_circ_g.3 AT3G04260_circ_g.4 AT3G04290_circ_g.1 AT3G04290_circ_g.2 AT3G04340_circ_g.1 AT3G04340_circ_g.2 AT3G04340_circ_g.3 AT3G04340_circ_g.4 AT3G04340_circ_g.5 AT3G04340_circ_g.6 AT3G04340_circ_g.7 AT3G04340_circ_g.9 AT3G04380_circ_g.1 AT3G04400_circ_g.1 AT3G04400_circ_g.2 AT3G04400_circ_g.3 AT3G04400_circ_g.4 AT3G04420_circ_g.1 AT3G04420_circ_g.2
Support reads 2
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G04340.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGGGCAGTATCATTTGTTCCAAGTGCTTTCTTTGAGCGTTCACTAATTCCTGCTTAATCTCA
GACCTCGAGAGTTTTGTAATGGAGCTTTCAGGAACActtgatatcaacgtaaaactccttgtca
tctccttttaatgcaacatacattacagcataatcatgcctaatcctggcactgtcaatcagct
tcctggaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 673
Transcript exons: 1150879-1151079,1151524-1151995
CTTGATATCAACGTAAAACTCCTTGTCATCTCCTTTTAATGCAACATACATTACAGCATAATCA
TGCCTAATCCTGGCACTGTCAATCAGCTTCCTGGAAACTGCGTAGGGAACAGCCATAGGGTCCA
TCTCCCACCTACTTTTGTCTTCGTTATACCAAGTCTTCGAAACAACTCTATCTCGATCCAGGAG
AACTTGTTCCTGTCTCTGCGCAATATATTGTTTGCCAAAATCAACATCTTCCAAAAGTTTCTGT
TTTAAATCGGCTTTTGCTTCTTCCTGCCACTTTTTCCAACCATGGCGTAGATGGAGCTGGATAG
CTTTCGGAACAACCACCTCTTTCTCTCCAAACATCCATTTCACCTCTGCTTCAGGAAATCCCTT
GACAGCTTCACCTTCTGGAGTCTTTTGAACAAAAAGCTTTTCTTCACCAAACTTTTTCATACGT
TTTCTGATACGATTCTGAAGATCTCTCTGCAGCTTTTTTGATTCCTCAAGGCGTTTTTTGATGC
GTAGAGAAAAATCCACTGAGTCACGATCGAAAAAGGGATCAACCTCCTCTAGTTCCAAAACATT
GGGCAGTATCATTTGTTCCAAGTGCTTTCTTTGAGCGTTCACTAATTCCTGCTTAATCTCAGAC
CTCGAGAGTTTTGTAATGGAGCTTTCAGGAACA

Genomic sequence CTTGATATCAACGTAAAACTCCTTGTCATCTCCTTTTAATGCAACATACATTACAGCATAATCA
TGCCTAATCCTGGCACTGTCAATCAGCTTCCTGGAAACTGCGTAGGGAACAGCCATAGGGTCCA
TCTCCCACCTACTTTTGTCTTCGTTATACCAAGTCTTCGAAACAACTCTATCTCGATCCAGGAG
AACTTGTTCCTTCAGATTTTAAAAATTCATTAACTAATTGGTGAATGATCAATACATGGGAAAA
TAAACTCTGCAAAAGACACATATGTACATAAACTTTTCAACAAGGTTTCAACTAAAACTGTCTC
ATTTTACGTATTACAGCGAGCCAAAAAAAAATTAAGTGCTTCTCACTTGCCCAAGTAAACTGAT
TTACTTTATAGCTCGAGAAGATAACACATGAAATTGCATATTCAATATATATAAAAAAAAAACT
TCAGAACCTACCAACACCAAGGCAATTCTTGAGGTTTCCATCACCCAAGAATACAAAGCTATAG
ATTAATTATGCTAATCGCAAGGCTAAGAGTGTAATTTATCTACCATGAAAAACATAAAGCATTG
TTCCATCCACCATATTAAACACACCACATACTTTTGGGCTAGTACTTCATATCATAAGCCAAAA
GTTACCTGTCTCTGCGCAATATATTGTTTGCCAAAATCAACATCTTCCAAAAGTTTCTGTTTTA
AATCGGCTTTTGCTTCTTCCTGCCACTTTTTCCAACCATGGCGTAGATGGAGCTGGATAGCTTT
CGGAACAACCACCTCTTTCTCTCCAAACATCCATTTCACCTCTGCTTCAGGAAATCCCTTGACA
GCTTCACCTTCTGGAGTCTTTTGAACAAAAAGCTTTTCTTCACCAAACTTTTTCATACGTTTTC
TGATACGATTCTGAAGATCTCTCTGCAGCTTTTTTGATTCCTCAAGGCGTTTTTTGATGCGTAG
AGAAAAATCCACTGAGTCACGATCGAAAAAGGGATCAACCTCCTCTAGTTCCAAAACATTGGGC
AGTATCATTTGTTCCAAGTGCTTTCTTTGAGCGTTCACTAATTCCTGCTTAATCTCAGACCTCG
AGAGTTTTGTAATGGAGCTTTCAGGAACA
Conservation Information
Conserved circRNAs NA
PMCS 0.221491883
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020