Plant Circular RNA Database

Detail information of AT3G03380_circ_g.6

			
						 General Information
					
						CircRNA Name
						AT3G03380_circ_g.6
					
						ID in PlantcircBase
						ath_circ_019468
					
						Alias
						3:801521-804487
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr3: 801521-804487  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT3G03380						
					
						Parent gene annotation
						
							Protease Do-like 7
							
						Parent gene strand
						+
					
						Alternative splicing
						
							3_circ_ag.3 AT3G03330_circ_g.1 AT3G03330_circ_g.2 AT3G03340_circ_g.1 AT3G03340_circ_g.2 AT3G03340_circ_g.3 AT3G03340_circ_g.4 AT3G03340_circ_g.5 AT3G03340_circ_g.6 AT3G03350_circ_g.1 AT3G03350_circ_g.2 3_circ_ag.3 AT3G03350_circ_g.4 3_circ_ag.5 AT3G03380_circ_g.1 AT3G03380_circ_g.2 AT3G03380_circ_g.3 AT3G03380_circ_g.4 AT3G03380_circ_g.5 AT3G03380_circ_g.7 AT3G03380_circ_g.8 AT3G03380_circ_g.9 AT3G03380_circ_g.10 AT3G03380_circ_g.11 AT3G03380_circ_g.12 AT3G03380_circ_g.13 AT3G03380_circ_g.14 AT3G03380_circ_g.15 AT3G03380_circ_g.16 AT3G03380_circ_g.17 AT3G03380_circ_g.18 AT3G03420_circ_g.1 AT3G03420_circ_g.2 AT3G03420_circ_g.3 AT3G03470_circ_g.1 AT3G03520_circ_g.1 AT3G03520_circ_g.2 AT3G03520_circ_g.3 AT3G03550_circ_g.1 AT3G03560_circ_g.1 AT3G03560_circ_g.2 AT3G03560_circ_g.3 AT3G03560_circ_g.4 AT3G03560_circ_g.5 AT3G03560_circ_g.6 AT3G03560_circ_g.7 AT3G03560_circ_g.8 AT3G03560_circ_g.9 AT3G03560_circ_g.10 AT3G03560_circ_g.11 AT3G03560_circ_g.12 AT3G03560_circ_g.13 AT3G03570_circ_g.1 AT3G03610_circ_g.1 AT3G03610_circ_g.2 AT3G03610_circ_g.3 AT3G03630_circ_g.1 AT3G03640_circ_g.1 AT3G03640_circ_g.2 AT3G03680_circ_g.1 AT3G03680_circ_g.2 AT3G03690_circ_g.1 AT3G03690_circ_g.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 AT3G03710_circ_g.1 AT3G03710_circ_g.2 AT3G03710_circ_g.3 3_circ_ag.4 AT3G03710_circ_g.5 AT3G03710_circ_g.6 AT3G03710_circ_g.7 AT3G03710_circ_g.8 AT3G03720_circ_g.1 AT3G03720_circ_g.2 AT3G03720_circ_g.3 AT3G03720_circ_g.4 AT3G03720_circ_g.5 AT3G03720_circ_g.6 AT3G03770_circ_g.1 AT3G03770_circ_g.2 AT3G03770_circ_g.3 AT3G03770_circ_g.4 AT3G03773_circ_g.1 AT3G03773_circ_g.2 AT3G03773_circ_g.3 AT3G03780_circ_g.1 AT3G03780_circ_g.2 AT3G03780_circ_g.3 AT3G03780_circ_g.4 AT3G03780_circ_g.5 AT3G03780_circ_g.6 AT3G03780_circ_g.7 AT3G03780_circ_g.8 AT3G03790_circ_g.1 AT3G03790_circ_g.2 AT3G03790_circ_g.3 AT3G03790_circ_g.4 AT3G03790_circ_g.5 AT3G03790_circ_g.6 AT3G03790_circ_g.7 AT3G03810_circ_g.1 AT3G03810_circ_g.2 AT3G03810_circ_g.3 AT3G03860_circ_g.1 AT3G03900_circ_g.1 AT3G03900_circ_g.2 AT3G03920_circ_g.1 AT3G03920_circ_g.2 AT3G03920_circ_g.3 AT3G03920_circ_g.4 AT3G03920_circ_g.5 AT3G03940_circ_g.1 AT3G03940_circ_g.2 AT3G03940_circ_g.3 AT3G03940_circ_g.4 AT3G03940_circ_g.5 AT3G03940_circ_g.6 AT3G03940_circ_g.7 AT3G03940_circ_g.8 AT3G03940_circ_g.9 AT3G03940_circ_g.10 AT3G03940_circ_g.11 AT3G03950_circ_g.1 AT3G03950_circ_g.2 AT3G03950_circ_g.3 AT3G03960_circ_g.1 AT3G03960_circ_g.2 AT3G03960_circ_g.3 AT3G03960_circ_g.4 AT3G03960_circ_g.5 AT3G03960_circ_g.6 AT3G03960_circ_g.7 AT3G03960_circ_g.8 AT3G03960_circ_g.9 AT3G04020_circ_g.1 AT3G04020_circ_g.2 AT3G04020_circ_g.3 AT3G04080_circ_g.1 AT3G04080_circ_g.2 AT3G04080_circ_g.3 AT3G04080_circ_g.4 AT3G04080_circ_g.5 AT3G04090_circ_g.1 AT3G04120_circ_g.1 AT3G04120_circ_g.2 AT3G04120_circ_g.3 AT3G04120_circ_g.4 AT3G04120_circ_g.5 AT3G04120_circ_g.6 AT3G04120_circ_g.7 AT3G04120_circ_g.8 AT3G04120_circ_g.9 AT3G04120_circ_g.10 AT3G04120_circ_g.11 AT3G04120_circ_g.12 AT3G04120_circ_g.13 AT3G04120_circ_g.14 AT3G04120_circ_g.15 AT3G04120_circ_g.16 AT3G04160_circ_g.1 AT3G04220_circ_g.1 AT3G04240_circ_g.1 AT3G04240_circ_g.2 AT3G04240_circ_g.3 AT3G04240_circ_g.4 AT3G04240_circ_g.5 AT3G04240_circ_g.6 AT3G04240_circ_g.7 AT3G04240_circ_g.8 AT3G04240_circ_g.9 AT3G04240_circ_g.10 AT3G04240_circ_g.11 AT3G04240_circ_g.12 AT3G04240_circ_g.13 AT3G04240_circ_g.14 AT3G04240_circ_g.15 AT3G04260_circ_g.1 AT3G04260_circ_g.2 AT3G04260_circ_g.3 AT3G04260_circ_g.4 AT3G04290_circ_g.1 AT3G04290_circ_g.2 AT3G04340_circ_g.1 AT3G04340_circ_g.2 AT3G04340_circ_g.3 AT3G04340_circ_g.4 AT3G04340_circ_g.5 AT3G04340_circ_g.6 AT3G04340_circ_g.7 AT3G04340_circ_g.8 AT3G04340_circ_g.9 AT3G04380_circ_g.1 AT3G04400_circ_g.1 AT3G04400_circ_g.2 AT3G04400_circ_g.3 AT3G04400_circ_g.4 AT3G04420_circ_g.1 AT3G04420_circ_g.2 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT3G03380.2:9
AT3G03380.1:9

General Information
CircRNA Name	AT3G03380_circ_g.6
ID in PlantcircBase	ath_circ_019468
Alias	3:801521-804487
Organism	Arabidpsis thaliana
Position	chr3: 801521-804487 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT3G03380
Parent gene annotation	Protease Do-like 7
Parent gene strand	+
Alternative splicing	3_circ_ag.3 AT3G03330_circ_g.1 AT3G03330_circ_g.2 AT3G03340_circ_g.1 AT3G03340_circ_g.2 AT3G03340_circ_g.3 AT3G03340_circ_g.4 AT3G03340_circ_g.5 AT3G03340_circ_g.6 AT3G03350_circ_g.1 AT3G03350_circ_g.2 3_circ_ag.3 AT3G03350_circ_g.4 3_circ_ag.5 AT3G03380_circ_g.1 AT3G03380_circ_g.2 AT3G03380_circ_g.3 AT3G03380_circ_g.4 AT3G03380_circ_g.5 AT3G03380_circ_g.7 AT3G03380_circ_g.8 AT3G03380_circ_g.9 AT3G03380_circ_g.10 AT3G03380_circ_g.11 AT3G03380_circ_g.12 AT3G03380_circ_g.13 AT3G03380_circ_g.14 AT3G03380_circ_g.15 AT3G03380_circ_g.16 AT3G03380_circ_g.17 AT3G03380_circ_g.18 AT3G03420_circ_g.1 AT3G03420_circ_g.2 AT3G03420_circ_g.3 AT3G03470_circ_g.1 AT3G03520_circ_g.1 AT3G03520_circ_g.2 AT3G03520_circ_g.3 AT3G03550_circ_g.1 AT3G03560_circ_g.1 AT3G03560_circ_g.2 AT3G03560_circ_g.3 AT3G03560_circ_g.4 AT3G03560_circ_g.5 AT3G03560_circ_g.6 AT3G03560_circ_g.7 AT3G03560_circ_g.8 AT3G03560_circ_g.9 AT3G03560_circ_g.10 AT3G03560_circ_g.11 AT3G03560_circ_g.12 AT3G03560_circ_g.13 AT3G03570_circ_g.1 AT3G03610_circ_g.1 AT3G03610_circ_g.2 AT3G03610_circ_g.3 AT3G03630_circ_g.1 AT3G03640_circ_g.1 AT3G03640_circ_g.2 AT3G03680_circ_g.1 AT3G03680_circ_g.2 AT3G03690_circ_g.1 AT3G03690_circ_g.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 AT3G03710_circ_g.1 AT3G03710_circ_g.2 AT3G03710_circ_g.3 3_circ_ag.4 AT3G03710_circ_g.5 AT3G03710_circ_g.6 AT3G03710_circ_g.7 AT3G03710_circ_g.8 AT3G03720_circ_g.1 AT3G03720_circ_g.2 AT3G03720_circ_g.3 AT3G03720_circ_g.4 AT3G03720_circ_g.5 AT3G03720_circ_g.6 AT3G03770_circ_g.1 AT3G03770_circ_g.2 AT3G03770_circ_g.3 AT3G03770_circ_g.4 AT3G03773_circ_g.1 AT3G03773_circ_g.2 AT3G03773_circ_g.3 AT3G03780_circ_g.1 AT3G03780_circ_g.2 AT3G03780_circ_g.3 AT3G03780_circ_g.4 AT3G03780_circ_g.5 AT3G03780_circ_g.6 AT3G03780_circ_g.7 AT3G03780_circ_g.8 AT3G03790_circ_g.1 AT3G03790_circ_g.2 AT3G03790_circ_g.3 AT3G03790_circ_g.4 AT3G03790_circ_g.5 AT3G03790_circ_g.6 AT3G03790_circ_g.7 AT3G03810_circ_g.1 AT3G03810_circ_g.2 AT3G03810_circ_g.3 AT3G03860_circ_g.1 AT3G03900_circ_g.1 AT3G03900_circ_g.2 AT3G03920_circ_g.1 AT3G03920_circ_g.2 AT3G03920_circ_g.3 AT3G03920_circ_g.4 AT3G03920_circ_g.5 AT3G03940_circ_g.1 AT3G03940_circ_g.2 AT3G03940_circ_g.3 AT3G03940_circ_g.4 AT3G03940_circ_g.5 AT3G03940_circ_g.6 AT3G03940_circ_g.7 AT3G03940_circ_g.8 AT3G03940_circ_g.9 AT3G03940_circ_g.10 AT3G03940_circ_g.11 AT3G03950_circ_g.1 AT3G03950_circ_g.2 AT3G03950_circ_g.3 AT3G03960_circ_g.1 AT3G03960_circ_g.2 AT3G03960_circ_g.3 AT3G03960_circ_g.4 AT3G03960_circ_g.5 AT3G03960_circ_g.6 AT3G03960_circ_g.7 AT3G03960_circ_g.8 AT3G03960_circ_g.9 AT3G04020_circ_g.1 AT3G04020_circ_g.2 AT3G04020_circ_g.3 AT3G04080_circ_g.1 AT3G04080_circ_g.2 AT3G04080_circ_g.3 AT3G04080_circ_g.4 AT3G04080_circ_g.5 AT3G04090_circ_g.1 AT3G04120_circ_g.1 AT3G04120_circ_g.2 AT3G04120_circ_g.3 AT3G04120_circ_g.4 AT3G04120_circ_g.5 AT3G04120_circ_g.6 AT3G04120_circ_g.7 AT3G04120_circ_g.8 AT3G04120_circ_g.9 AT3G04120_circ_g.10 AT3G04120_circ_g.11 AT3G04120_circ_g.12 AT3G04120_circ_g.13 AT3G04120_circ_g.14 AT3G04120_circ_g.15 AT3G04120_circ_g.16 AT3G04160_circ_g.1 AT3G04220_circ_g.1 AT3G04240_circ_g.1 AT3G04240_circ_g.2 AT3G04240_circ_g.3 AT3G04240_circ_g.4 AT3G04240_circ_g.5 AT3G04240_circ_g.6 AT3G04240_circ_g.7 AT3G04240_circ_g.8 AT3G04240_circ_g.9 AT3G04240_circ_g.10 AT3G04240_circ_g.11 AT3G04240_circ_g.12 AT3G04240_circ_g.13 AT3G04240_circ_g.14 AT3G04240_circ_g.15 AT3G04260_circ_g.1 AT3G04260_circ_g.2 AT3G04260_circ_g.3 AT3G04260_circ_g.4 AT3G04290_circ_g.1 AT3G04290_circ_g.2 AT3G04340_circ_g.1 AT3G04340_circ_g.2 AT3G04340_circ_g.3 AT3G04340_circ_g.4 AT3G04340_circ_g.5 AT3G04340_circ_g.6 AT3G04340_circ_g.7 AT3G04340_circ_g.8 AT3G04340_circ_g.9 AT3G04380_circ_g.1 AT3G04400_circ_g.1 AT3G04400_circ_g.2 AT3G04400_circ_g.3 AT3G04400_circ_g.4 AT3G04420_circ_g.1 AT3G04420_circ_g.2
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT3G03380.2:9 AT3G03380.1:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTCCAGTCTTGGAGACTTAGTATCTGTTCTTTCAAAGCTTTCTAGGGGTGCTCGTGTTCCATTG
GAATATATGTCTCACACTGATCGTCATCGCAAGAAGgcagcatcaggtactaaaggtggttcaa
gtggttctcccgtcattgattggcaaggcagggcagtagctttgaatgctggcagcaagtcgtc
aagtgcat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 810
Transcript exons: 801521-801646,802100-802189,802632-802697,802792-802848,
802972-803037,803262-803369,803689-803769,804116-804165,
804322-804487
GCAGCATCAGGTACTAAAGGTGGTTCAAGTGGTTCTCCCGTCATTGATTGGCAAGGCAGGGCAG
TAGCTTTGAATGCTGGCAGCAAGTCGTCAAGTGCATCAGCCTTCTTCCTACCACTTCAACGAGT
TGTTAGGGCGTTAAGTTTTCTCCAAAAAAGCATTGACTCGCGGACGGATAAGCCAAAAGCAGTT
CATATTCCTCGTGGTACACTTCAGATGACATTTCTTCATAAAGGATTCGATGAGATACGGCGAC
TTGGTCTCAGGAGCGAAACTGAACAGGTGGTTCGACATGCATCTCCAACTGGGGAAACAGGAAT
GCTTGTTGTCGATTCTGTGGTGCCAAGTGGCCCTGCTGATAAACATTTGGAGCCGGGAGATGTT
CTTGTTCGGGTGAATGGAACAGTGCTCACACAATTTTTGAACTTGGAGAATCTGCTTGATGACG
GTGTTGGCCAGATACTTGAATTGGAGATTGAAAGGGGTGGACAACCACTATCTGTTAGTGTATC
AGTACAAGATTTACACTCAATCACTCCAGATCACTTCCTGGAAGTAAGCGGTGCTGTAATTCAT
CCGTTGTCTTATCAGCAGGCTCGCAATTTTCGTTTTCCTTGTGGCCTGGCTTATGTTGCGGACC
CTGGATACATGCTATTTAGAGCTGGGGTCCCTCGACATGCTATCATAAAGAAGGTTGCTAATGA
GGATATTTCCAGTCTTGGAGACTTAGTATCTGTTCTTTCAAAGCTTTCTAGGGGTGCTCGTGTT
CCATTGGAATATATGTCTCACACTGATCGTCATCGCAAGAAG
						
					

						Genomic sequence
						
							GCAGCATCAGGTACTAAAGGTGGTTCAAGTGGTTCTCCCGTCATTGATTGGCAAGGCAGGGCAG
TAGCTTTGAATGCTGGCAGCAAGTCGTCAAGTGCATCAGCCTTCTTCCTACCACTTCAACGAGT
GAGCAATCTCTGTTTCTCGTATACTTGTATCGATGGTTCAGTTACGACTAGAATCGAGATGGTG
TAACTTATTTAGTCACTGAAATAACCCCTGTAAATTCAGAACATTAGATTATTGTGTAGCTTCT
GCTTCTGTCAAAGTTAAGAATTGATAAGTGTATAAAGCCTCCACTAGAGGGTTGTTTAATGTGC
TTGGTATTCCGAAAAATAGTTCATGCTGGAAGTGTGTACAATGTTACGAATAAACTACACATCT
ACTTCAGATCTCTTCTTTTCATGTATGGGATCCTGAGAATCTAGTAGGAAACACTGGGAAAGTC
AGACATGGTTCTGGATCTCATTTTTTTTGTTCTTTACAAATCATTTTGTATTTCAACCCCTATA
TTAATTTGAAGTTTAGTTAGAAATTTGCTTAAGACTTTTGACCAAGAATGGTTCTCTTGTTTGG
AAGGTTGTTAGGGCGTTAAGTTTTCTCCAAAAAAGCATTGACTCGCGGACGGATAAGCCAAAAG
CAGTTCATATTCCTCGTGGTACACTTCAGGTTTGTTTTTCCCTCTCTGATTTTTGAGACTCTTC
ATAGTGCCGTTACGAAAATTTCCGCGAATATCAACTTTTGACTCTTTTTTAAATAGCTGGGTTC
AGTTTATTGTCTGAAAAACTACACATACCATTACATGTACATGGTATGTCAATTAAATGTATGC
GATATGAATGTTGTGTTCAAATCCTAGAGGGAAAATATATACGTTGAAAATCGTGAATATTACT
TGATATCTGAATGACCATGGAACTTTGATCTGGACTACTGTGGCTGGTGATAGAAAGAATATCC
TTGGGATCTGAAATAGTTCATGGTTTAATTTCTATTCACTTTCCAACGATTGTTAGATTTGAGA
TTCAGAGGAAGTTCAATATCTCTTACTTAATTATTAGTTCTGGGGTTTTCTTATGTAAGCTTTT
ATCTGTTTTCTTGTGTACTTTAGATGACATTTCTTCATAAAGGATTCGATGAGATACGGCGACT
TGGTCTCAGGAGCGAAACTGAACAGGTACATACTATTCCTTCTTACCATCATTTAGGGCATCAG
CTTTCCTCGTGATGCTCACTAACACCTTACAAAATGCTATCTCTTGATCGTGTAGGTGGTTCGA
CATGCATCTCCAACTGGGGAAACAGGAATGCTTGTTGTCGATTCTGTGGTGAGTGCATTGCTTT
ATTAATAACATTCAATACAATAATTATTTTCAAAGAATATGGCTATTGTTTAAGTGATGGTTAA
ATTCGAAACTTTTTATCCTAAATTTGATATGTCGTGATGGTAGGTGCCAAGTGGCCCTGCTGAT
AAACATTTGGAGCCGGGAGATGTTCTTGTTCGGGTGAATGGAACAGTAAGTTGTCTTGATTGCA
TCTTCTTAGTGAGAATTTAAATTTTTTTTGCCTCAAGTAATCGAGAATTGTGATATCTTTTGCG
GCAACATTAGTAAAGAAACGTATTGTTTAGAGATTGGTTATTACCTGGCCACAGAACGTATTAA
TCAGTGCACTTAGATTGTCTAGTTCCTTTTTCCTCAGTTTGCTAAATCTTCCTTTATGCGTTTG
ATTGTTATTACAGGTGCTCACACAATTTTTGAACTTGGAGAATCTGCTTGATGACGGTGTTGGC
CAGATACTTGAATTGGAGATTGAAAGGGGTGGACAACCACTATCTGTTAGTGTATCAGTGAGTT
CCATTCTTCTATTTCTAACTTTGGTTTTATGTTCCTCGTAGTCTTCTAGGATCTTGTGTTTAGT
TTCTGCCCTGTCACATACTGACTAGAAAAGCAGGAGACTATGCAAAGACTAGAAGTAAAATATA
TGTAGCCGTCTCTTCTCTTTTATTTTGGTCATTAAATTTGTTCTTGTAGCTCTTTTCGTTTCCC
CTGATAGATGGAGTTCCTCAATACTTAATTTGCATTTAGAATTCTGCCTTAATGTGATTTATAC
TTCCTATCTATCATAAAAATCAAGAGCCTTATGTGTTTGTGTATTTCCTGCCACAGGTACAAGA
TTTACACTCAATCACTCCAGATCACTTCCTGGAAGTAAGCGGTGCTGTAATTCATCCGTTGTCT
TATCAGCAGGTAACTTAACTATGACTTGAAAAGATATTATCTGGAAATTTCTGTGCCTGCATGC
ATGATATTCTTGTGTCGTACAGGTGGAACTGTTGTGTTTAATTATGGCTTGTAACTATTTAATG
TTCTATTAGTTGGAGAATCATATCAACATGCTAGATATTTTATTCATAATAAATGCTGTGGATC
CACTTTATCCCCCACACTGTCTTGCTAGATCTGATTATGGAAGCATAACTAAGTGAAATAGTGA
TGTGACTACACTACCTCCTGCTAATAAAGAAGCTTACACGTATTTCACTGACACTTTCTTATTG
GCATTAGCTGATCTTAAAATATTGTGATTTAACAGGCTCGCAATTTTCGTTTTCCTTGTGGCCT
GGCTTATGTTGCGGACCCTGGGTAATTCCCTCTACTTCCGCCATCAAAATTTTCACGTTTTCTT
GATTTATTTTTGACTGATGTGTCAATATTCTGACATGTGAGCTTATTGTTAATGTAAATGATTA
CGTGTCTCTGTATTTCTGGATTTACTTTGAAGAGCTCTTTTCTATTCAGATACATGCTATTTAG
AGCTGGGGTCCCTCGACATGCTATCATAAAGAAGGTTGCTAATGAGGATATTTCCAGTCTTGGA
GACTTAGTATCTGTTCTTTCAAAGCTTTCTAGGGGTGCTCGTGTTCCATTGGAATATATGTCTC
ACACTGATCGTCATCGCAAGAAG
						
					

			
		

Sequences
Splice junction sequence	TTCCAGTCTTGGAGACTTAGTATCTGTTCTTTCAAAGCTTTCTAGGGGTGCTCGTGTTCCATTG GAATATATGTCTCACACTGATCGTCATCGCAAGAAGgcagcatcaggtactaaaggtggttcaa gtggttctcccgtcattgattggcaaggcagggcagtagctttgaatgctggcagcaagtcgtc aagtgcat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 810 Transcript exons: 801521-801646,802100-802189,802632-802697,802792-802848, 802972-803037,803262-803369,803689-803769,804116-804165, 804322-804487 GCAGCATCAGGTACTAAAGGTGGTTCAAGTGGTTCTCCCGTCATTGATTGGCAAGGCAGGGCAG TAGCTTTGAATGCTGGCAGCAAGTCGTCAAGTGCATCAGCCTTCTTCCTACCACTTCAACGAGT TGTTAGGGCGTTAAGTTTTCTCCAAAAAAGCATTGACTCGCGGACGGATAAGCCAAAAGCAGTT CATATTCCTCGTGGTACACTTCAGATGACATTTCTTCATAAAGGATTCGATGAGATACGGCGAC TTGGTCTCAGGAGCGAAACTGAACAGGTGGTTCGACATGCATCTCCAACTGGGGAAACAGGAAT GCTTGTTGTCGATTCTGTGGTGCCAAGTGGCCCTGCTGATAAACATTTGGAGCCGGGAGATGTT CTTGTTCGGGTGAATGGAACAGTGCTCACACAATTTTTGAACTTGGAGAATCTGCTTGATGACG GTGTTGGCCAGATACTTGAATTGGAGATTGAAAGGGGTGGACAACCACTATCTGTTAGTGTATC AGTACAAGATTTACACTCAATCACTCCAGATCACTTCCTGGAAGTAAGCGGTGCTGTAATTCAT CCGTTGTCTTATCAGCAGGCTCGCAATTTTCGTTTTCCTTGTGGCCTGGCTTATGTTGCGGACC CTGGATACATGCTATTTAGAGCTGGGGTCCCTCGACATGCTATCATAAAGAAGGTTGCTAATGA GGATATTTCCAGTCTTGGAGACTTAGTATCTGTTCTTTCAAAGCTTTCTAGGGGTGCTCGTGTT CCATTGGAATATATGTCTCACACTGATCGTCATCGCAAGAAG
Genomic sequence	GCAGCATCAGGTACTAAAGGTGGTTCAAGTGGTTCTCCCGTCATTGATTGGCAAGGCAGGGCAG TAGCTTTGAATGCTGGCAGCAAGTCGTCAAGTGCATCAGCCTTCTTCCTACCACTTCAACGAGT GAGCAATCTCTGTTTCTCGTATACTTGTATCGATGGTTCAGTTACGACTAGAATCGAGATGGTG TAACTTATTTAGTCACTGAAATAACCCCTGTAAATTCAGAACATTAGATTATTGTGTAGCTTCT GCTTCTGTCAAAGTTAAGAATTGATAAGTGTATAAAGCCTCCACTAGAGGGTTGTTTAATGTGC TTGGTATTCCGAAAAATAGTTCATGCTGGAAGTGTGTACAATGTTACGAATAAACTACACATCT ACTTCAGATCTCTTCTTTTCATGTATGGGATCCTGAGAATCTAGTAGGAAACACTGGGAAAGTC AGACATGGTTCTGGATCTCATTTTTTTTGTTCTTTACAAATCATTTTGTATTTCAACCCCTATA TTAATTTGAAGTTTAGTTAGAAATTTGCTTAAGACTTTTGACCAAGAATGGTTCTCTTGTTTGG AAGGTTGTTAGGGCGTTAAGTTTTCTCCAAAAAAGCATTGACTCGCGGACGGATAAGCCAAAAG CAGTTCATATTCCTCGTGGTACACTTCAGGTTTGTTTTTCCCTCTCTGATTTTTGAGACTCTTC ATAGTGCCGTTACGAAAATTTCCGCGAATATCAACTTTTGACTCTTTTTTAAATAGCTGGGTTC AGTTTATTGTCTGAAAAACTACACATACCATTACATGTACATGGTATGTCAATTAAATGTATGC GATATGAATGTTGTGTTCAAATCCTAGAGGGAAAATATATACGTTGAAAATCGTGAATATTACT TGATATCTGAATGACCATGGAACTTTGATCTGGACTACTGTGGCTGGTGATAGAAAGAATATCC TTGGGATCTGAAATAGTTCATGGTTTAATTTCTATTCACTTTCCAACGATTGTTAGATTTGAGA TTCAGAGGAAGTTCAATATCTCTTACTTAATTATTAGTTCTGGGGTTTTCTTATGTAAGCTTTT ATCTGTTTTCTTGTGTACTTTAGATGACATTTCTTCATAAAGGATTCGATGAGATACGGCGACT TGGTCTCAGGAGCGAAACTGAACAGGTACATACTATTCCTTCTTACCATCATTTAGGGCATCAG CTTTCCTCGTGATGCTCACTAACACCTTACAAAATGCTATCTCTTGATCGTGTAGGTGGTTCGA CATGCATCTCCAACTGGGGAAACAGGAATGCTTGTTGTCGATTCTGTGGTGAGTGCATTGCTTT ATTAATAACATTCAATACAATAATTATTTTCAAAGAATATGGCTATTGTTTAAGTGATGGTTAA ATTCGAAACTTTTTATCCTAAATTTGATATGTCGTGATGGTAGGTGCCAAGTGGCCCTGCTGAT AAACATTTGGAGCCGGGAGATGTTCTTGTTCGGGTGAATGGAACAGTAAGTTGTCTTGATTGCA TCTTCTTAGTGAGAATTTAAATTTTTTTTGCCTCAAGTAATCGAGAATTGTGATATCTTTTGCG GCAACATTAGTAAAGAAACGTATTGTTTAGAGATTGGTTATTACCTGGCCACAGAACGTATTAA TCAGTGCACTTAGATTGTCTAGTTCCTTTTTCCTCAGTTTGCTAAATCTTCCTTTATGCGTTTG ATTGTTATTACAGGTGCTCACACAATTTTTGAACTTGGAGAATCTGCTTGATGACGGTGTTGGC CAGATACTTGAATTGGAGATTGAAAGGGGTGGACAACCACTATCTGTTAGTGTATCAGTGAGTT CCATTCTTCTATTTCTAACTTTGGTTTTATGTTCCTCGTAGTCTTCTAGGATCTTGTGTTTAGT TTCTGCCCTGTCACATACTGACTAGAAAAGCAGGAGACTATGCAAAGACTAGAAGTAAAATATA TGTAGCCGTCTCTTCTCTTTTATTTTGGTCATTAAATTTGTTCTTGTAGCTCTTTTCGTTTCCC CTGATAGATGGAGTTCCTCAATACTTAATTTGCATTTAGAATTCTGCCTTAATGTGATTTATAC TTCCTATCTATCATAAAAATCAAGAGCCTTATGTGTTTGTGTATTTCCTGCCACAGGTACAAGA TTTACACTCAATCACTCCAGATCACTTCCTGGAAGTAAGCGGTGCTGTAATTCATCCGTTGTCT TATCAGCAGGTAACTTAACTATGACTTGAAAAGATATTATCTGGAAATTTCTGTGCCTGCATGC ATGATATTCTTGTGTCGTACAGGTGGAACTGTTGTGTTTAATTATGGCTTGTAACTATTTAATG TTCTATTAGTTGGAGAATCATATCAACATGCTAGATATTTTATTCATAATAAATGCTGTGGATC CACTTTATCCCCCACACTGTCTTGCTAGATCTGATTATGGAAGCATAACTAAGTGAAATAGTGA TGTGACTACACTACCTCCTGCTAATAAAGAAGCTTACACGTATTTCACTGACACTTTCTTATTG GCATTAGCTGATCTTAAAATATTGTGATTTAACAGGCTCGCAATTTTCGTTTTCCTTGTGGCCT GGCTTATGTTGCGGACCCTGGGTAATTCCCTCTACTTCCGCCATCAAAATTTTCACGTTTTCTT GATTTATTTTTGACTGATGTGTCAATATTCTGACATGTGAGCTTATTGTTAATGTAAATGATTA CGTGTCTCTGTATTTCTGGATTTACTTTGAAGAGCTCTTTTCTATTCAGATACATGCTATTTAG AGCTGGGGTCCCTCGACATGCTATCATAAAGAAGGTTGCTAATGAGGATATTTCCAGTCTTGGA GACTTAGTATCTGTTCTTTCAAAGCTTTCTAGGGGTGCTCGTGTTCCATTGGAATATATGTCTC ACACTGATCGTCATCGCAAGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.175558959

Conservation Information
Conserved circRNAs	NA
PMCS	0.175558959

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT3G03380_circ_g.6

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