Detail information of Os07g0592200_circ_g.4


General Information
CircRNA Name Os07g0592200_circ_g.4
ID in PlantcircBase osa_circ_034615
Alias Os_ciR1693
Organism Oryza sativa
Position chr7: 24132639-24135330  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os07g0592200
Parent gene annotation Aspartic protease, Pollen germination and pollen tube growth (Os
07t0592200-02);Similar to predicted protein. (Os07t0592200-03)
Parent gene strand -
Alternative splicing Os07g0592200_circ_g.2 Os07g0592200_circ_g.3 Os07g0592200_circ_g.5 Os07g0592200_circ_g.6 Os07g0592200_circ_g.7
Support reads 6/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0592200-03:5
Os07t0592200-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCATAAGTGCATTGACTCCTCTCATTATCACAAGTACAATCAACATTGCATTTTACTGGTGA
ATATGTACTGGAGAGATCAGGTTGGAATCGTGGATCcaggcaaaccactaggagcaggagctgg
tgccatatctccctctgaatctgaaggtgctgatgaaggaacttcactaatatggagcctctcc
cacaactc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1015
Transcript exons: 24132639-24132815,24133811-24133883,24134003-24134099,24
134180-24134262,24134623-24134779,24134903-24135330
CAGGCAAACCACTAGGAGCAGGAGCTGGTGCCATATCTCCCTCTGAATCTGAAGGTGCTGATGA
AGGAACTTCACTAATATGGAGCCTCTCCCACAACTCTGAACAGTTAGTTTTCCAAAAGCCAATC
TTCTCATTGTGACGGTCATAGGTTACAAGAGTATTACGGACAACAATTCCCCCTAATAGTGTTG
TCGGATCTTTTCCATTCTGAAACACACCCAAGCAATAAGCCCCTTCAACCTTCGAATGCCGGAA
CAAATAGTTTTCAGGTGAAAGCGAAAGCTTCTGCCCATTTCCAAATACCATGTCAACATCTGGA
AATACCTCTGATAATTGGGAGACGTTCCTTCCAGCACCTGCAAAGCAGATGTCTTTATAATTTG
GATCTGGGCCACGGATTTTCTTCAGAGAATTTACTTTATTTGTCACAGCATCTTTAAATGCAAC
AAATGCTTGTTCAGGCAGGTAAGCATATGTGGTTCCACTATCTAAGACAGTGCCATGTTTGCTG
TTGAATATCTTTGGGTCTAACCGCAATGCCTTTCCGGCAACATGTATTTCCTTTAACTCAATGT
TGTAATACGGGCTGCGGACAGGGTTTGAATGAGAGAAAACCATGTCAGGAGGAGCAGGCATCCC
ACCAAGTACCATAGTACCACCACCAACATCCATTCCACCATAGCACAGAGAGAATGAATCACTA
ATGACACCCTTCTCAACAAGCTGATCCATTATGCTAAGTTGACCACGGCCCAGCCCCATAATAC
CATCAGCATGTTGACTGAACAAATCTCCTGTTTCGGTGTTTTCACAGCCAAAAACAGCACGCTG
TGGCTTAAGTTCACTTTCTTTGCCAAATGACATAATGTCCTCGCCAAGCACACCACTGCTGGAG
CTCATTTCAGCATACTGCCTCTCATAAGTGCATTGACTCCTCTCATTATCACAAGTACAATCAA
CATTGCATTTTACTGGTGAATATGTACTGGAGAGATCAGGTTGGAATCGTGGATC

Genomic sequence CAGGCAAACCACTAGGAGCAGGAGCTGGTGCCATATCTCCCTCTGAATCTGAAGGTGCTGATGA
AGGAACTTCACTAATATGGAGCCTCTCCCACAACTCTGAACAGTTAGTTTTCCAAAAGCCAATC
TTCTCATTGTGACGGTCATAGGTTACAAGAGTATTACGGACAACAATTCCTGCCAGTAAGATCA
TTATTCTTTAGACACTCAAAGCGGGCAAGGTTTCAAAGTACATAGAGCCATGCAAACTATTAGA
ACATTCATGTAGACTGTCTATAAATCAAATAAAAGGTCAAAATTAATATAAGAAAAGTATAAAT
CTCTCTAAAGATTGATCTGCTTGACTCTTTAAGGGATAGAGAAGAGAACAAAAACACCATACTT
TCCTTTTAGAGACAAAAGAGTGCATAAATACAACAAGCAGCCAAGGTCTATTATACTGTTGGCA
GAAAAAAAATTTCTTGGTACAATACCGTATGTTGGCTTGCAACCGGCAATTAATAAAGAGAATG
CCTCCTTTGTAGGCTCAACCACTTTTAGAGTTTTAACTGATAATTCCATGAACACTTTGCTTCT
AACCTCAAATTTTCTGAAATCAGGAATAACTCTTAAGGATGCTTGTTTTTGGATTGTTCACAGA
TAATTGCATGTTTGTTATCTATGAAAAAAATAGAGGGTTTATGCATTCTTATATTCATAAAATG
ATAAACAATGTTGGTATTTCACAGCCATGGTTTTCGGATTACACACCAATCATTGCATACTTGC
ACACGTAAACTATTGGATTACGAAATTGAATAAGTGCAGCCAAGAAATTGCCATAGTGATGAAG
GAACAAGCTACACTGACACAAAAGTTACCTCAGATTATATCTAAAAAATATTGAAAAGTGCATC
AGCTGGTTATGCTGAAAAAGATAAGGAGACCATTGTTATATAGTAGTATTTTCTACAAAGAGAG
TTACTTGGTTTTCTACTCAAGTTTCCAGCAGACGCGAGTGTATAAGCTGGTCAAAGACTCATAG
TACAGGTGCAAATGTTATTCAGCATACACTAGTAACAAGTTATATGCGAATAAAGTAGAGATAG
TGTAGTCAGATGATATAAATAAAAGAAGTCCAATGGAAATTTTCTTGAAGTTCCTCGTAAGAGA
CCAAGAGTTGAAGATCTTACCCCCTAATAGTGTTGTCGGATCTTTTCCATTCTGAAACACACCC
AAGCAATAAGCCCCTTCAACCTTCGAATGCTTTATTTTGAAACCGGAAAGAAGAGAAGACAAAA
CATGAACTCAACAACAGGCAAAGCAAAAAAGTAATGGGGTGTCATAATTCATCAGAACAGGTCT
AAGCTTGGAATTTCTCATACCCGGAACAAATAGTTTTCAGGTGAAAGCGAAAGCTTCTGCCCAT
TTCCAAATACCATGTCAACATCTGGAAATACCTCTGATAATTGGGAGACGTTCCTGAAGGTAAA
GTGATAAGATAAGAACATTGATGATGAAAACAAAGGGGGTAGAAATTGTTATCATGGTGCAAGA
GTTACCTTCCAGCACCTGCAAAGCAGATGTCTTTATAATTTGGATCTGGGCCACGGATTTTCTT
CAGAGAATTTACTTTATTTGTCACCTATCCATTAAAAACATAATTATTCCAGCATACTTTTCCA
GGAGTGTCCATTTTAAAGATTTCCATTTTCAGGAATGACAATGAAGAGCTGAATAAAAACAAAA
TGAAAAGAATCTGCAATGCGACAACCAAGATAGCAGAAAAGGTGCCAAACAGATTGGCTCGTAC
ACATGCAAAACCAGGTGTTGCCAAAGTAGGAGTAAATTTTTCTGTCTTAACATCTGAAACTAGA
CAGGTTAATTGCAAAATTGGCATCTAGGGAAATATATTAAATATAAAATAGTAAAGTAGCATAG
TTAGCAGATGGTAAAAGCAATTCAAAAAAGGTAAAAGTGGAGGAGATATCATTTGATAACTTAC
AGCATCTTTAAATGCAACAAATGCTTGTTCAGGCAGGTAAGCATATGTGGTTCCACTATCTAAG
ACAGTGCCATGTTTGCTGTTGAATATCTTTGGGTCTAACCGCAATGCCTTTCCGGCAACATGTA
TTTCCTTTAACTCAATGTTGTAATACGGGCTGTTGACAATCCAAAATTAATAAGGAAATGTATT
AAATATACAGAACATTAGAAAACCTTCCTCCAGCAGGCTACTAAAAGAATCTTCAGTCTGGTGT
GGAAAAAACAAAAATGTATAATACCTGCGGACAGGGTTTGAATGAGAGAAAACCATGTCAGGAG
GAGCAGGCATCCCACCAAGTACCATAGTACCACCACCAACATCCATTCCACCATAGCACAGAGA
GAATGAATCACTAATGACACCCTTCTCAACAAGCTGATCCATTATGCTAAGTTGACCACGGCCC
AGCCCCATAATACCATCAGCATGTTGACTGAACAAATCTCCTGTTTCGGTGTTTTCACAGCCAA
AAACAGCACGCTGTGGCTTAAGTTCACTTTCTTTGCCAAATGACATAATGTCCTCGCCAAGCAC
ACCACTGCTGGAGCTCATTTCAGCATACTGCCTCTCATAAGTGCATTGACTCCTCTCATTATCA
CAAGTACAATCAACATTGCATTTTACTGGTGAATATGTACTGGAGAGATCAGGTTGGAATCGTG
GATC
Conservation Information
Conserved circRNAs osi_circ_007305*
PMCS 0.377306764
Functional Information
Coding potential Y
Potential coding position 24135298-24132775(+)
24135218-24135313(-)
24132787-24135313(-)
Potential amino acid sequence MYWRDQVGIVDPGKPLGAGAGAISPSESEGADEGTSLIWSLSHNSEQLVFQKPIFSL*(+)
MSSSSGVLGEDIMSFGKESELKPQRAVFGCENTETGDLFSQHADGIMGLGRGQLSIMDQLVEKG
VISDSFSLCYGGMDVGGGTMVLGGMPAPPDMVFSHSNPVRSPYYNIELKEIHVAGKALRLDPKI
FNSKHGTVLDSGTTYAYLPEQAFVAFKDAVTNKVNSLKKIRGPDPNYKDICFAGAGRNVSQLSE
VFPDVDMVFGNGQKLSLSPENYLFRHSKVEGAYCLGVFQNGKDPTTLLGGIVVRNTLVTYDRHN
EKIGFWKTNCSELWERLHISEVPSSAPSDSEGDMAPAPAPSGLPGSTIPT*(-)
MTVTMRRLAFGKLTVQSCGRGSILVKFLHQHLQIQREIWHQLLLLVVCLDPRFQPDLSSTYSPV
KCNVDCTCDNERSQCTYERQYAEMSSSSGVLGEDIMSFGKESELKPQRAVFGCENTETGDLFSQ
HADGIMGLGRGQLSIMDQLVEKGVISDSFSLCYGGMDVGGGTMVLGGMPAPPDMVFSHSNPVRS
PYYNIELKEIHVAGKALRLDPKIFNSKHGTVLDSGTTYAYLPEQAFVAFKDAVTNKVNSLKKIR
GPDPNYKDICFAGAGRNVSQLSEVFPDVDMVFGNGQKLSLSPENYLFRHSKVEGAYCLGVFQNG
KDPTTLLGGIVVRNTLVTYDRHNEKIGFWKTNCSELWERLHISEVPSSAPSDSEGDMAPAPAPS
GLPGSTIPT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017