Detail information of Os07g0592200_circ_g.7


General Information
CircRNA Name Os07g0592200_circ_g.7
ID in PlantcircBase osa_circ_034618
Alias NA
Organism Oryza sativa
Position chr7: 24134279-24134622  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os07g0592200
Parent gene annotation Aspartic protease, Pollen germination and pollen tube growth (Os
07t0592200-02);Similar to predicted protein. (Os07t0592200-03)
Parent gene strand -
Alternative splicing Os07g0592200_circ_g.2 Os07g0592200_circ_g.3 Os07g0592200_circ_g.4 Os07g0592200_circ_g.5 Os07g0592200_circ_g.6
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AG-CA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAATATATTAAATATAAAATAGTAAAGTAGCATAGTTAGCAGATGGTAAAAGCAATTCAAAAA
AGGTAAAAGTGGAGGAGATATCATTTGATAACTTACtaattattccagcatacttttccaggag
tgtccattttaaagatttccattttcaggaatgacaatgaagagctgaataaaaacaaaatgaa
aagaatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAATTATTCCAGCATACTTTTCCAGGAGTGTCCATTTTAAAGATTTCCATTTTCAGGAATGACA
ATGAAGAGCTGAATAAAAACAAAATGAAAAGAATCTGCAATGCGACAACCAAGATAGCAGAAAA
GGTGCCAAACAGATTGGCTCGTACACATGCAAAACCAGGTGTTGCCAAAGTAGGAGTAAATTTT
TCTGTCTTAACATCTGAAACTAGACAGGTTAATTGCAAAATTGGCATCTAGGGAAATATATTAA
ATATAAAATAGTAAAGTAGCATAGTTAGCAGATGGTAAAAGCAATTCAAAAAAGGTAAAAGTGG
AGGAGATATCATTTGATAACTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.140792369
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017