Detail information of AT2G04030_circ_g.24


General Information
CircRNA Name AT2G04030_circ_g.24
ID in PlantcircBase ath_circ_012742
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1284912-1285471  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G04030
Parent gene annotation HSP90.5
Parent gene strand +
Alternative splicing AT2G04030_circ_g.23 AT2G04030_circ_g.25 AT2G04030_circ_g.26 AT2G04030_circ_g.27
Support reads 20
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04030.1:3
AT2G04030.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGGCACAGGCTCTTGGAGACACTTCAAGCCTGGAGTTCATGAGAGGTAGGAGAATACTAGAG
ATCAATCCAGATCATCCCATCATCAAAGACTTGAACgttctatatttggttgaaccaatcgatg
aagttgctattcagaatttgcaaacctacaaagaaaagaaattcgttgatatcagtaaagaaga
tttggaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTATATTTGGTTGAACCAATCGATGAAGTTGCTATTCAGAATTTGCAAACCTACAAAGAAA
AGAAATTCGTTGATATCAGTAAAGAAGATTTGGAACTCGGTAAGTATGGTTTAGCACTGCTGAC
TGCCCGCACATTTCTCTCAACCATTTGTTTGTAACAAAACGTGTCCATTCTCGCAGGAGATGAA
GATGAAGTAAAGGACAGGGAAGCGAAACAAGAGTTTAACCTTCTCTGTGACTGGATAAAACAGC
AGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAACCGTTTGAGCTCTTCTCCTTGTGTGCT
TGTCTCTGGCAAATTCGGGTGGTCAGCTAATATGGAAAGGTTAGTACTTCAGCAAAAGCTTTAT
AACCTGAAATCCACATACCATAAAACTTATGTGCTTGTTCATTGACTTATGTGCTTATTCATTG
TGAAAGGCTAATGAAGGCACAGGCTCTTGGAGACACTTCAAGCCTGGAGTTCATGAGAGGTAGG
AGAATACTAGAGATCAATCCAGATCATCCCATCATCAAAGACTTGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.197510822
Functional Information
Coding potential Y
Potential coding position 1285263-1285468(+)
Potential amino acid sequence MERLMKAQALGDTSSLEFMRGRRILEINPDHPIIKDLNVLYLVEPIDEVAIQNLQTYKEKKFVD
ISKEDLELGDEDEVKDREAKQEFNLLCDWIKQQLGDKVAKVQVSNRLSSSPCVLVSGKFGWSAN
MERLMKAQALGDTSSLEFMRGRRILEINPDHPIIKDLNVLYLVEPIDEVAIQNLQTYKEKKFVD
ISKEDLELGDEDEVKDREAKQEFNLLCDWIKQQLGDKVAKVQVSNRLSSSPCVLVSGKFGWSAN
MERLMKAQALGDTSSLEFMRGRRILEINPDHPIIKDLNVLYLVEPIDEVAIQNLQTYKEKKFVD
ISKEDLELGDEDEVKDREAKQEFNLLCDWIKQQLGDKVAKVQVSNRLSSSPCVLVSGKFGWSAN
MERLMKAQALGDTSSLEFMRGRRILEINPDHPIIKDLN(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to heat stress
Other Information
References Pan et al., 2017