Detail information of AT2G04030_circ_g.26


General Information
CircRNA Name AT2G04030_circ_g.26
ID in PlantcircBase ath_circ_012744
Alias 2:1285096-1285270
Organism Arabidpsis thaliana
Position chr2: 1285096-1285270  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04030
Parent gene annotation HSP90.5
Parent gene strand +
Alternative splicing AT2G04030_circ_g.23 AT2G04030_circ_g.24 AT2G04030_circ_g.25 AT2G04030_circ_g.27
Support reads 1/1/1
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04030.1:1
AT2G04030.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAAAAGTCCAAGTCTCAAACCGTTTGAGCTCTTCTCCTTGTGTGCTTGTCTCTGGCAAATTC
GGGTGGTCAGCTAATATGGAAAGgagatgaagatgaagtaaaggacagggaagcgaaacaagag
tttaaccttctctgtgactggataaaacagcagctcggtgacaaagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 175
Transcript exons: 1285096-1285270
GAGATGAAGATGAAGTAAAGGACAGGGAAGCGAAACAAGAGTTTAACCTTCTCTGTGACTGGAT
AAAACAGCAGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAACCGTTTGAGCTCTTCTCCT
TGTGTGCTTGTCTCTGGCAAATTCGGGTGGTCAGCTAATATGGAAAG

Genomic sequence GAGATGAAGATGAAGTAAAGGACAGGGAAGCGAAACAAGAGTTTAACCTTCTCTGTGACTGGAT
AAAACAGCAGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAACCGTTTGAGCTCTTCTCCT
TGTGTGCTTGTCTCTGGCAAATTCGGGTGGTCAGCTAATATGGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.417349563
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020