Detail information of AT2G04030_circ_g.23


General Information
CircRNA Name AT2G04030_circ_g.23
ID in PlantcircBase ath_circ_012741
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1284912-1285270  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G04030
Parent gene annotation HSP90.5
Parent gene strand +
Alternative splicing AT2G04030_circ_g.24 AT2G04030_circ_g.25 AT2G04030_circ_g.26 AT2G04030_circ_g.27
Support reads 2/2
Tissues whole_plant/seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04030.1:2
AT2G04030.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAACCGTTTGAGCTCTTCTCCTTGTGTGCTTGT
CTCTGGCAAATTCGGGTGGTCAGCTAATATGGAAAGgttctatatttggttgaaccaatcgatg
aagttgctattcagaatttgcaaacctacaaagaaaagaaattcgttgatatcagtaaagaaga
tttggaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 278
Transcript exons: 1284912-1285014,1285096-1285270
GTTCTATATTTGGTTGAACCAATCGATGAAGTTGCTATTCAGAATTTGCAAACCTACAAAGAAA
AGAAATTCGTTGATATCAGTAAAGAAGATTTGGAACTCGGAGATGAAGATGAAGTAAAGGACAG
GGAAGCGAAACAAGAGTTTAACCTTCTCTGTGACTGGATAAAACAGCAGCTCGGTGACAAAGTT
GCAAAAGTCCAAGTCTCAAACCGTTTGAGCTCTTCTCCTTGTGTGCTTGTCTCTGGCAAATTCG
GGTGGTCAGCTAATATGGAAAG

Genomic sequence GTTCTATATTTGGTTGAACCAATCGATGAAGTTGCTATTCAGAATTTGCAAACCTACAAAGAAA
AGAAATTCGTTGATATCAGTAAAGAAGATTTGGAACTCGGTAAGTATGGTTTAGCACTGCTGAC
TGCCCGCACATTTCTCTCAACCATTTGTTTGTAACAAAACGTGTCCATTCTCGCAGGAGATGAA
GATGAAGTAAAGGACAGGGAAGCGAAACAAGAGTTTAACCTTCTCTGTGACTGGATAAAACAGC
AGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAACCGTTTGAGCTCTTCTCCTTGTGTGCT
TGTCTCTGGCAAATTCGGGTGGTCAGCTAATATGGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.288384208
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Pan et al., 2017