Detail information of AT2G04030_circ_g.27


General Information
CircRNA Name AT2G04030_circ_g.27
ID in PlantcircBase ath_circ_012745
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1285096-1285641  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder
Parent gene AT2G04030
Parent gene annotation HSP90.5
Parent gene strand +
Alternative splicing AT2G04030_circ_g.23 AT2G04030_circ_g.24 AT2G04030_circ_g.25 AT2G04030_circ_g.26
Support reads 107
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04030.1:3
AT2G04030.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGGTACAGGCTGCTTGTAAGAATGCACCAGAGAGCACTGAAGCAACAAGAGTGGTCGATCTC
TTGTATGACACTGCTATAATATCAAGTGGATTCACTgagatgaagatgaagtaaaggacaggga
agcgaaacaagagtttaaccttctctgtgactggataaaacagcagctcggtgacaaagttgca
aaagtcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGATGAAGATGAAGTAAAGGACAGGGAAGCGAAACAAGAGTTTAACCTTCTCTGTGACTGGAT
AAAACAGCAGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAACCGTTTGAGCTCTTCTCCT
TGTGTGCTTGTCTCTGGCAAATTCGGGTGGTCAGCTAATATGGAAAGGTTAGTACTTCAGCAAA
AGCTTTATAACCTGAAATCCACATACCATAAAACTTATGTGCTTGTTCATTGACTTATGTGCTT
ATTCATTGTGAAAGGCTAATGAAGGCACAGGCTCTTGGAGACACTTCAAGCCTGGAGTTCATGA
GAGGTAGGAGAATACTAGAGATCAATCCAGATCATCCCATCATCAAAGACTTGAACGTAAGTGT
GTGGTATAATATTCTCTCAGAAATCTCTTGTCTCGAAAAAGCCTTATTAATTTTTGTATTCTTT
TGGTACAGGCTGCTTGTAAGAATGCACCAGAGAGCACTGAAGCAACAAGAGTGGTCGATCTCTT
GTATGACACTGCTATAATATCAAGTGGATTCACT
Conservation Information
Conserved circRNAs NA
PMCS 0.208152624
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017