Detail information of AT2G04030_circ_g.25


General Information
CircRNA Name AT2G04030_circ_g.25
ID in PlantcircBase ath_circ_012743
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1284912-1285641  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G04030
Parent gene annotation HSP90.5
Parent gene strand +
Alternative splicing AT2G04030_circ_g.23 AT2G04030_circ_g.24 AT2G04030_circ_g.26 AT2G04030_circ_g.27
Support reads 17
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04030.2:4
AT2G04030.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGGTACAGGCTGCTTGTAAGAATGCACCAGAGAGCACTGAAGCAACAAGAGTGGTCGATCTC
TTGTATGACACTGCTATAATATCAAGTGGATTCACTgttctatatttggttgaaccaatcgatg
aagttgctattcagaatttgcaaacctacaaagaaaagaaattcgttgatatcagtaaagaaga
tttggaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTATATTTGGTTGAACCAATCGATGAAGTTGCTATTCAGAATTTGCAAACCTACAAAGAAA
AGAAATTCGTTGATATCAGTAAAGAAGATTTGGAACTCGGTAAGTATGGTTTAGCACTGCTGAC
TGCCCGCACATTTCTCTCAACCATTTGTTTGTAACAAAACGTGTCCATTCTCGCAGGAGATGAA
GATGAAGTAAAGGACAGGGAAGCGAAACAAGAGTTTAACCTTCTCTGTGACTGGATAAAACAGC
AGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAACCGTTTGAGCTCTTCTCCTTGTGTGCT
TGTCTCTGGCAAATTCGGGTGGTCAGCTAATATGGAAAGGTTAGTACTTCAGCAAAAGCTTTAT
AACCTGAAATCCACATACCATAAAACTTATGTGCTTGTTCATTGACTTATGTGCTTATTCATTG
TGAAAGGCTAATGAAGGCACAGGCTCTTGGAGACACTTCAAGCCTGGAGTTCATGAGAGGTAGG
AGAATACTAGAGATCAATCCAGATCATCCCATCATCAAAGACTTGAACGTAAGTGTGTGGTATA
ATATTCTCTCAGAAATCTCTTGTCTCGAAAAAGCCTTATTAATTTTTGTATTCTTTTGGTACAG
GCTGCTTGTAAGAATGCACCAGAGAGCACTGAAGCAACAAGAGTGGTCGATCTCTTGTATGACA
CTGCTATAATATCAAGTGGATTCACT
Conservation Information
Conserved circRNAs NA
PMCS 0.192562772
Functional Information
Coding potential Y
Potential coding position 1285263-1285638(+)
Potential amino acid sequence MERLMKAQALGDTSSLEFMRGRRILEINPDHPIIKDLNAACKNAPESTEATRVVDLLYDTAIIS
SGFTVLYLVEPIDEVAIQNLQTYKEKKFVDISKEDLELGDEDEVKDREAKQEFNLLCDWIKQQL
GDKVAKVQVSNRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPII
KDLNAACKNAPESTEATRVVDLLYDTAIISSGFTVLYLVEPIDEVAIQNLQTYKEKKFVDISKE
DLELGDEDEVKDREAKQEFNLLCDWIKQQLGDKVAKVQVSNRLSSSPCVLVSGKFGWSANMERL
MKAQALGDTSSLEFMRGRRILEINPDHPIIKDLNAACKNAPESTEATRVVDLLYDTAIISSGFT
VLYLVEPIDEVAIQNLQTYKEKKFVDISKEDLELGDEDEVKDREAKQEFNLLCDWIKQQLGDKV
AKVQVSNRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIIKDLN
AACKNAPESTEATRVVDLLYDTAIISSGFT(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to heat stress
Other Information
References Pan et al., 2017