Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G04030_circ_g.25 |
ID in PlantcircBase | ath_circ_012743 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 1284912-1285641 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT2G04030 |
Parent gene annotation |
HSP90.5 |
Parent gene strand | + |
Alternative splicing | AT2G04030_circ_g.23 AT2G04030_circ_g.24 AT2G04030_circ_g.26 AT2G04030_circ_g.27 |
Support reads | 17 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G04030.2:4 AT2G04030.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.192562772 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1285263-1285638(+) |
Potential amino acid sequence |
MERLMKAQALGDTSSLEFMRGRRILEINPDHPIIKDLNAACKNAPESTEATRVVDLLYDTAIIS SGFTVLYLVEPIDEVAIQNLQTYKEKKFVDISKEDLELGDEDEVKDREAKQEFNLLCDWIKQQL GDKVAKVQVSNRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPII KDLNAACKNAPESTEATRVVDLLYDTAIISSGFTVLYLVEPIDEVAIQNLQTYKEKKFVDISKE DLELGDEDEVKDREAKQEFNLLCDWIKQQLGDKVAKVQVSNRLSSSPCVLVSGKFGWSANMERL MKAQALGDTSSLEFMRGRRILEINPDHPIIKDLNAACKNAPESTEATRVVDLLYDTAIISSGFT VLYLVEPIDEVAIQNLQTYKEKKFVDISKEDLELGDEDEVKDREAKQEFNLLCDWIKQQLGDKV AKVQVSNRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIIKDLN AACKNAPESTEATRVVDLLYDTAIISSGFT(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to heat stress |
Other Information | |
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References | Pan et al., 2017 |