Detail information of Os03g0239400_circ_g.1


General Information
CircRNA Name Os03g0239400_circ_g.1
ID in PlantcircBase osa_circ_018787
Alias NA
Organism Oryza sativa
Position chr3: 7358923-7360686  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0239400
Parent gene annotation Similar to Transcription factor HBP-1a(C14). (Os03t0239400-01)
Parent gene strand -
Alternative splicing Os03g0239400_circ_g.2 Os03g0239400_circ_g.3 Os03g0239400_circ_g.4 Os03g0239400_circ_g.5 Os03g0239400_circ_g.6 Os03g0239400_circ_g.7 Os03g0239400_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0239400-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCCAGTATGGCATCATAGGGTTAAGCACAACTGGCCCAGTAGATGCTTGTACGGGCTCAACCG
CAGAACTCTGAGCAGTAGCTCCTTTGTTGCTAGCATatgtaaagttgtattttctgaggtcaag
ctattgcacttctcctgaagttgtttcaattcttccttaagtgagctgttttcctgctttagca
aatcagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGTAAAGTTGTATTTTCTGAGGTCAAGCTATTGCACTTCTCCTGAAGTTGTTTCAATTCTTCC
TTAAGTGAGCTGTTTTCCTGCTTTAGCAAATCAGCTCGATTGGCTACTTCCTCCCATTCAGCCT
GTAGTATTTCATTTGTTACAACATATATATCATCAAAAGGAAGGTTAATAGTAAATTTATAAAA
AAAAATACCGCAAAAATAACATTGCATTGCTTATTTAACCCTGGTCATATACATCCAGCATTGG
AATAACTAGGTGTAACCAGCACCTGCAACAGTTTGACTACCCATAGCAGTAAAAGGAGATACGG
TTGATAAAATAGTACACTAGTAATGGACTCCTCAAAAAAAATACTCCCCCCATTTTTTTTTATA
TGCTGTTGGTTAGTTCAAAAATGAACGAAACAACATCATATAGGAAAACGGAGGGAGTATACTA
GTGATACAACAAGCTGAGAACCCTAAGACGAACCATACATTCTTAAGTTAACAAATGGACAATG
ATATGTATGCGAGAAGCCGAGAACCAAAAAAAAAAAAGAAGAAAAAGAACCAATCCACCCTTAT
ATCACCAAAAGAGAATTGATCAAGAATATCTGCAGTCAACCTAATATTGTATTGGGAGGTTGTT
TCCCATGCTTGCTTATATATCCATGACTTTTAAAACAAATATAGTGTGTATTTTAAAGATGTAT
CTCAAGAAGTTAGAAAACATCTCTCTACACCAGTCAAAAATGTAGTTGCCAATTTTGCGACTCA
CTGGATTGTCATTGAAGTGCGGTAAATTATACTCACTCGACTAATAAGGTACTGGTTCAACAAC
AATTGGGTTGTAATCCTAAGCAGTTTGAATTTCAAAGTTTGATGTTTTAAGAATAATTTGGGTA
ATTTTTTACTTGTCTTTAGCAATCATGAAAAGAGAGCTGGGTAATGAGTAATGAAAATCCTCTA
CAATTCAAAATCAGCTTTGAATTATGATCCAATGGACTGCCAAGCTAATATCTTCAAACATATT
GTTCAGTTCAGATTCTGGTCAAACCATCCATAAAAGAAAATTCATTTAAAGCACCATCAATATC
CTGGGCTCTAGCATAGCGTGCATGCGCGCATGCATGCCATACAGGCTATGTATATTTAAGTATT
ATTCCCGTCTGCGGTCAATTCAAATAGGTTCAACCTTATCAAAATTCACTGCTGATTAGGTTGA
ATCCAAGTTGGCCTCTTATGGATTAGTTGTTTACAGAAACACAGACTACCCAAAGATAATAAGA
ACAGCAAACGACAGCCAAATCCATGCAGACTGGTGCAGAAACTACAGACCTGCTTGCGTAATCT
TGAACGTCGAGCTGATTCCCTATTTGATTGCTTCCGCTTTTGTCTCTTCAGTTCTCGCTCATCC
TGCATTAAAAATAAAATACAGCCCTAAGGAAATTGCAAGGTTGGTTCCTGTAACACAGCAAAAA
CAAGAAACAAATCCTGCACAGCAATAAACCTGTATGGCTGGATCACTGAGAACAACATCACGAG
AGTTTGATGAAGGAGCTGATGCTGGTGCTGCAATAACTTTATTATGCATGGGTACTGAAGTAGG
AGTACCCCAGTAATCCATTCCCATGTTTACACCAGTTGCTGGGCCAGCCATGGGAGGAGGGACA
GGCCAGTATGGCATCATAGGGTTAAGCACAACTGGCCCAGTAGATGCTTGTACGGGCTCAACCG
CAGAACTCTGAGCAGTAGCTCCTTTGTTGCTAGCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.142006156
Functional Information
Coding potential Y
Potential coding position 7360605-7360602(-)
Potential amino acid sequence MMPYWPVPPPMAGPATGVNMGMDYWGTPTSVPMHNKVIAAPASAPSSNSRDVVLSDPAIQDERE
LKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSENTTLH
MLATKELLLRVLRLSPYKHLLGQLCLTL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017