Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0239400_circ_g.8 |
ID in PlantcircBase | osa_circ_018793 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 7363162-7363992 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | Os03g0239400 |
Parent gene annotation |
Similar to Transcription factor HBP-1a(C14). (Os03t0239400-01) |
Parent gene strand | - |
Alternative splicing | Os03g0239400_circ_g.1 Os03g0239400_circ_g.2 Os03g0239400_circ_g.3 Os03g0239400_circ_g.4 Os03g0239400_circ_g.5 Os03g0239400_circ_g.6 Os03g0239400_circ_g.7 |
Support reads | 3 |
Tissues | shoot, seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0239400-01:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_004665* osi_circ_014115 |
PMCS | 0.231449549 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7363963-7363376(+) 7363542-7363989(-) |
Potential amino acid sequence |
MRQKIFLLASTVDPTYMGAPEDLEPHLDGKSPVGSLELSQQDYSMPEIETSPDMQ*(+) MGKGEVATRSKSQKSSATQNEQSTPTNPPTAYPDWSQFQAYYNPAGTAPMTPPGFFHPNVAPSP QGHPYMWGPQC*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |