Detail information of Os03g0239400_circ_g.8


General Information
CircRNA Name Os03g0239400_circ_g.8
ID in PlantcircBase osa_circ_018793
Alias NA
Organism Oryza sativa
Position chr3: 7363162-7363992  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene Os03g0239400
Parent gene annotation Similar to Transcription factor HBP-1a(C14). (Os03t0239400-01)
Parent gene strand -
Alternative splicing Os03g0239400_circ_g.1 Os03g0239400_circ_g.2 Os03g0239400_circ_g.3 Os03g0239400_circ_g.4 Os03g0239400_circ_g.5 Os03g0239400_circ_g.6 Os03g0239400_circ_g.7
Support reads 3
Tissues shoot, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0239400-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTACAAGACACCTTTGATCTTCTATATTTTCTTGGTCAATGAAGCAGTGGAGTCTCTAAGTAT
CATGGATGCGGCAGAAAATTTTCTTATTGGCTAGCActgtggaccccacatatatgggtgcccc
tgaggacttggagccacatttggatggaaaaagcccggtggggtcattggagctgtcccagcag
gattatag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 367
Transcript exons: 7363162-7363266,7363348-7363407,7363484-7363586,7363894-
7363992
CTGTGGACCCCACATATATGGGTGCCCCTGAGGACTTGGAGCCACATTTGGATGGAAAAAGCCC
GGTGGGGTCATTGGAGCTGTCCCAGCAGGATTATAGTATGCCTGAAATTGAGACCAGTCCGGAT
ATGCAGTAGGAGGATTAGTGGGTGTACTCTGTTCATTCTGTGTCGCCGATGATTTTTGAGATTT
GGACCTAGTGGCTACCTCTCCTTTTCCCATGCTTTATTCCTCCCTAGATTACTCTATTCCTTTT
AACACCTAAGTTCTACAAGACACCTTTGATCTTCTATATTTTCTTGGTCAATGAAGCAGTGGAG
TCTCTAAGTATCATGGATGCGGCAGAAAATTTTCTTATTGGCTAGCA

Genomic sequence CTGTGGACCCCACATATATGGGTGCCCCTGAGGACTTGGAGCCACATTTGGATGGAAAAAGCCC
GGTGGGGTCATTGGAGCTGTCCCAGCAGGATTATAGTATGCCTACAGATTGATACTAACCAGTA
CAGTAAACAATATAGTGGAAAAAGTTAAATGGATGCAAGATGAACTCATTTTATGAACCTGAAA
TTGAGACCAGTCCGGATATGCAGTAGGAGGATTAGTGGGTGTACTCTGTTCATTCTAAAACAAG
CAAAACAAGGTAAGAGAATTTCACTAATTAGTAATTAGTCTTGTAGTTTCAGATTGTTGTACAT
ACCTGTGTCGCCGATGATTTTTGAGATTTGGACCTAGTGGCTACCTCTCCTTTTCCCATGCTTT
ATTCCTCCCTAGATTACTCTATTCCTTTTAACACCTAAGTTCTGAAAATAAGACAAATTTATGA
AGTGATCATTAATCATGTGTCTCAATGGTTTTTAAAATAATGTTTTCCGAAACGCTTAAATTAG
ATCTTCCTTGCCTTTAAGGAAGTGAAAAATAAAAGGATTTCAGCAAGCAAACAAATTGTGTCAT
GGATAAAATAATTTTGAAAGGAGAGATGACTATTAATCATTATCAGAGCATAGAATAATACACA
AGTGCAGAAAAACACTCGGAACCCAACAAACATGGAAAAAAAATTATCAGGTGAAACGATGAAT
ATATAAACAACCGGCAGAAGCTTCCTACCTACAAGACACCTTTGATCTTCTATATTTTCTTGGT
CAATGAAGCAGTGGAGTCTCTAAGTATCATGGATGCGGCAGAAAATTTTCTTATTGGCTAGCA
Conservation Information
Conserved circRNAs osi_circ_004665* osi_circ_014115
PMCS 0.231449549
Functional Information
Coding potential Y
Potential coding position 7363963-7363376(+)
7363542-7363989(-)
Potential amino acid sequence MRQKIFLLASTVDPTYMGAPEDLEPHLDGKSPVGSLELSQQDYSMPEIETSPDMQ*(+)
MGKGEVATRSKSQKSSATQNEQSTPTNPPTAYPDWSQFQAYYNPAGTAPMTPPGFFHPNVAPSP
QGHPYMWGPQC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017