Detail information of Os03g0239400_circ_g.7


General Information
CircRNA Name Os03g0239400_circ_g.7
ID in PlantcircBase osa_circ_018792
Alias NA
Organism Oryza sativa
Position chr3: 7363162-7363586  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, CIRI, PcircRNA_finder, circRNA_finder, find_circ
Parent gene Os03g0239400
Parent gene annotation Similar to Transcription factor HBP-1a(C14). (Os03t0239400-01)
Parent gene strand -
Alternative splicing Os03g0239400_circ_g.1 Os03g0239400_circ_g.2 Os03g0239400_circ_g.3 Os03g0239400_circ_g.4 Os03g0239400_circ_g.5 Os03g0239400_circ_g.6 Os03g0239400_circ_g.8
Support reads 3
Tissues shoot, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0239400-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTCGCCGATGATTTTTGAGATTTGGACCTAGTGGCTACCTCTCCTTTTCCCATGCTTTATTCC
TCCCTAGATTACTCTATTCCTTTTAACACCTAAGTTctgtggaccccacatatatgggtgcccc
tgaggacttggagccacatttggatggaaaaagcccggtggggtcattggagctgtcccagcag
gattatag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTGGACCCCACATATATGGGTGCCCCTGAGGACTTGGAGCCACATTTGGATGGAAAAAGCCC
GGTGGGGTCATTGGAGCTGTCCCAGCAGGATTATAGTATGCCTACAGATTGATACTAACCAGTA
CAGTAAACAATATAGTGGAAAAAGTTAAATGGATGCAAGATGAACTCATTTTATGAACCTGAAA
TTGAGACCAGTCCGGATATGCAGTAGGAGGATTAGTGGGTGTACTCTGTTCATTCTAAAACAAG
CAAAACAAGGTAAGAGAATTTCACTAATTAGTAATTAGTCTTGTAGTTTCAGATTGTTGTACAT
ACCTGTGTCGCCGATGATTTTTGAGATTTGGACCTAGTGGCTACCTCTCCTTTTCCCATGCTTT
ATTCCTCCCTAGATTACTCTATTCCTTTTAACACCTAAGTT
Conservation Information
Conserved circRNAs osi_circ_014114
PMCS 0.153250137
Functional Information
Coding potential Y
Potential coding position 7363542-7363556(-)
Potential amino acid sequence MGKGEVATRSKSQKSSATQNEQSTPTNPPTAYPDWSQFQAYYNPAGTAPMTPPGFFHPNVAPSP
QGHPYMWGPQNLGVKRNRVI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017