Detail information of Os03g0239400_circ_g.2


General Information
CircRNA Name Os03g0239400_circ_g.2
ID in PlantcircBase osa_circ_018788
Alias NA
Organism Oryza sativa
Position chr3: 7360252-7362140  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0239400
Parent gene annotation Similar to Transcription factor HBP-1a(C14). (Os03t0239400-01)
Parent gene strand -
Alternative splicing Os03g0239400_circ_g.1 Os03g0239400_circ_g.3 Os03g0239400_circ_g.4 Os03g0239400_circ_g.5 Os03g0239400_circ_g.6 Os03g0239400_circ_g.7 Os03g0239400_circ_g.8
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0239400-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAGTAACTGAAGTAACATAACAAAGCGGTATGATAGAGTGACATACACTTTTTGAATTTGTA
CTGCTTCCTTCAGAAGAACTTCCACTTCCGCTCTCActgcttgcgtaatcttgaacgtcgagct
gattccctatttgattgcttccgcttttgtctcttcagttctcgctcatcctgcattaaaaata
aaatacag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTGCGTAATCTTGAACGTCGAGCTGATTCCCTATTTGATTGCTTCCGCTTTTGTCTCTTC
AGTTCTCGCTCATCCTGCATTAAAAATAAAATACAGCCCTAAGGAAATTGCAAGGTTGGTTCCT
GTAACACAGCAAAAACAAGAAACAAATCCTGCACAGCAATAAACCTGTATGGCTGGATCACTGA
GAACAACATCACGAGAGTTTGATGAAGGAGCTGATGCTGGTGCTGCAATAACTTTATTATGCAT
GGGTACTGAAGTAGGAGTACCCCAGTAATCCATTCCCATGTTTACACCAGTTGCTGGGCCAGCC
ATGGGAGGAGGGACAGGCCAGTATGGCATCATAGGGTTAAGCACAACTGGCCCAGTAGATGCTT
GTACGGGCTCAACCGCAGAACTCTGAGCAGTAGCTCCTTTGTTGCTAGCATCTGGACAAAAAGG
TAATTAGATTGCAGTCAATCCTTACTACATGAGAAAAATTTCTTATTGTCTTAACTAATATATT
TATTAATTGCTTATAACAAAAACAAGCATAGTTTCACAATTTTATTCTTCAATAAAGCTACCAA
TGGCAGGTTGTAGAATATGTTCAGTACTATACTAGGAGTAAACCCCTAATATACCACTGGAAAT
TTCGTCGGTTCCTAATATGTCATCAAAATTTTGCTTGTACCAAATATGCCACTTTGAATCCAAA
TCTAAACCCACACCCAATATGCCAACGGATGATGATTGCATATGGTACTTCCTCGCCCTTGCTT
TCTTAAAAACCTTGTGTCTAAACAGTGATTTTTGCCATATGTGTTTTCAACACGGAAAATGTTT
TTCAGGCATGCCTCCTGCACCACTATAATATTCATGAGTTTTTGCAGAATCTTTTATGAGCTAC
AGATTTTCCTTGAAAATTCTACTGTTTTATATAAAAAAAAGAGAGGTTCTTAATCCTACCATTA
CCCTGGCCATGCTCAGAACCATCCTTTGTCCTTGAACCCTGCAAGCAAATTGTTTGTACATATT
TGTCTTAGGTTAGCAAGAAAATGATCGTATGAAGCAAAAGGAGCAAAAAGGAAAAAAAAAAAAA
CATAGAGGATTGAGTGCATCCATATACTTTGTTCACAGGCTAGAAGGCTATAGTGCATTTTGAA
AGTAGTGGCAACCATGGATACACCCAGCACAAAAAGGTACCAAACATGCATGCAACAAAAAAAA
AAGATCCATTCTTTCAAAAAAAAAAAAGATCCACATACTATAAGTATTTGGTGGGGAAAACAAG
TTCCTAAGGGTTTCAGAACAATCGATCAACACTAATTATTAAAGGGTACAACACATGTGGCGAG
AGCAAAGAATAATCAACTCGAGTCTAATAACTAACGACTATGCGAATGGTCAAGAACTTTAATA
GAAGGGCTCACCATTCGATTTTTTTTTAGTATCACCAAAAATCAGACTGTTTCATTATCAGTTG
GGATCCTCTTATTACAAGATTTGCACTTTGCAGATCTTTATTTTGCAAACATCCAGAACCTTGA
AGAGAAGTACAACCCAACTAGTCTAGGTGGGTTTCTGATGGCCAATATGCAGAGCCAGTGTGCA
ACCCTAGTACCCAACTAACTTGCACCTCTAAATAGTGTACCAGTTCAGTACAGGTGCCGTAAGC
AATAATACAAAGGCTTAGACTCTAGATATTGCGCATGACAAACAAGACCTTCAGTAGGGGGGGG
GGATGCCAGAGTGGTAAAACAAAAGGCATGCTGCCTTTGGAATTTGTACTGGTGAGAAAAATGA
AGTAACTGAAGTAACATAACAAAGCGGTATGATAGAGTGACATACACTTTTTGAATTTGTACTG
CTTCCTTCAGAAGAACTTCCACTTCCGCTCTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.129029932
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017