Detail information of Os11g0572100_circ_g.7


General Information
CircRNA Name Os11g0572100_circ_g.7
ID in PlantcircBase osa_circ_009650
Alias Os_ciR7103
Organism Oryza sativa
Position chr11: 21449039-21450943  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os11g0572100
Parent gene annotation Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-01);Similar to
DNA ligase (EC 6.5.1.2). (Os11t0572100-02);Similar to Replicati
on factor C 110 kDa subunit. (Os11t0572100-03);Similar to Replic
ation factor C 110 kDa subunit. (Os11t0572100-04)
Parent gene strand +
Alternative splicing Os11g0572100_circ_g.3 Os11g0572100_circ_g.4 Os11g0572100_circ_g.5 Os11g0572100_circ_g.6 Os11g0572100_circ_g.8
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0572100-02:5
Os11t0572100-04:5
Os11t0572100-01:5
Os11t0572100-03:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCACAGGATGAAGCTGTGCAAAAAGTGGTGGAGTTTATGGATACCTACTCTTTAAGCCAGGAA
GACTTTGACACAATTGTTGAATTATCAAAATTTAAGgaaaactatatcaattatcggcctatca
ctgttgggaaggatgacagtggagttaaaagaatgaattttcttgctcgtgctgctgaatctat
agcggacg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 513
Transcript exons: 21449039-21449220,21449305-21449344,21449434-21449558,21
450401-21450473,21450851-21450943
GAAAACTATATCAATTATCGGCCTATCACTGTTGGGAAGGATGACAGTGGAGTTAAAAGAATGA
ATTTTCTTGCTCGTGCTGCTGAATCTATAGCGGACGCTGATATTGTTAATGTACAAATAAGAAG
ATATCGACAGTGGCAATTGTCCCAAGCTGCTTGTTTGTCTTCATCTATAGTTCCTGCTGCTTTG
ATGCATGGGAATAGAGAGATCCTTGAAGCAGGTGAGCGAAACTTCAATAGGTTTGGTGGATGGT
TGGGAAAGTACTCGACCACAAATAAAAACATAAGGCTACTGGAAGATGCCCATAGTCATATTCT
TGCCTCCCAGCAAGCAAATTTGGACAGGGAGTCATTGAGGCTGGATTACCTCACTCTTCTCTTG
AGACAATTGACTGATCCACTGAAGACAATGCCCAAGGATGAAGCTGTGCAAAAAGTGGTGGAGT
TTATGGATACCTACTCTTTAAGCCAGGAAGACTTTGACACAATTGTTGAATTATCAAAATTTAA
G

Genomic sequence GAAAACTATATCAATTATCGGCCTATCACTGTTGGGAAGGATGACAGTGGAGTTAAAAGAATGA
ATTTTCTTGCTCGTGCTGCTGAATCTATAGCGGACGCTGATATTGTTAATGTACAAATAAGAAG
ATATCGACAGTGGCAATTGTCCCAAGCTGCTTGTTTGTCTTCATCTATAGTTCCGTAAGTATAT
GGTGGTTATTATCTGCTGTAATCGATTTAATTCAAATGTCTCACTGATCCACTAATCTATTTCA
CATCTTACAGTGCTGCTTTGATGCATGGGAATAGAGAGATCCTTGAAGCAGTAAAGCTCAAACC
TTATCATCAATTACTTTTTTTGTTTAGTTTATTTTTGGTAATTCTGGCTCATTGAATTGGATAA
TAAATCTGTAGGGTGAGCGAAACTTCAATAGGTTTGGTGGATGGTTGGGAAAGTACTCGACCAC
AAATAAAAACATAAGGCTACTGGAAGATGCCCATAGTCATATTCTTGCCTCCCAGCAAGCAAAT
TTGGACAGGTGGATATACTTTTACATATTCTACAAATTTATCCTTTCTGGCATTCCATGGATTC
TGTTTTTACTCTTCACACGTATGATGCATCGTGTATCAGGTTGTAAAGCAAGGTGATTGATTGT
TTTCTTCTCTTGTTTTATTCTGTCACAAGCGGCATCTTAAATATCTGACTAACTATATAAATTT
GCCAAACAAACCCAAGCTTTTTTTTTTAGTTTGGTAAGGATTTGAATATTGTTACATCTTTGGG
TTGATATGATCTTAATCTTCCATTGTGCTTATAAATCTGAATGGATTTAGGCCAGTTCATGGTT
TCAAATAGATTTTCATGTTATTATCTGAATAAAAATGTTTTGTGTATTAGTCCTAAATCGTAAT
TCCAAACCCTAAGGATAATCAGCTCATCAGTGAATCGGCTAATTAGTTTAGCACTTGGAAGTTA
GAACTTAATCAAATAACATGGAATTCCAGCATGATATACCTTGATACCTCCATCTATGCTCAAG
AAGACAGGCACTAAATTTCCATTGAATTTCTTTCAATGGCTGGCAACATATTAATTGATGGACA
TGTCATGCTTGTTTCCTGATGTTACTATGTTTGAAAATCATGGTTTTCTTAACAGTGAGCAAAT
TAAACAAGCCTTACTTTTCTTAACTTGCCTGAATCAGTCAATAAGCCAAGGAAAATCACCATTG
GTTTTTGAACTTTGTTTTAGCAACATTGAATAAAAACCCATGCCTTTTCAAGATGTTGTGGTCC
ACATGAGTACAATCTGATCTTTAAGATGATTTTCGATGGTTTATCATGAGATAATCCAATCTTA
TATTGTTGAGAACTGCAGGGAGTCATTGAGGCTGGATTACCTCACTCTTCTCTTGAGACAATTG
ACTGATCCACTGAAGACAATGCCCAAGGTATATGTAGATGTGATCTATTAATTAACTCCTTGTT
TTGTTCTATGGCATTATACTTGAATGTTTCATGATGAGGATAATGACCTGGACACTGGCATTTT
AGAAATTTATCTTGATACCTCTAAATGCATTAGTGTACTAGCCATCTTCTGGAGTATTCTGAAG
TAAGGAGTCTCTTTAATTTCATTTGCTGAAAAAAAAAATCTGCAGGAGAGCGTCCATACCTTGA
CTTGTGTACACGGCTCATCAATTCTGAGTTTTAACATACTGTTATCTTGCCTTTATGTAATAGT
ATTACCAGTCTTCTTACAATAATTCCCTGTTAAGAATCTTTACCTGAGCTATCTGCTGGTTATC
TTATATTTGTAAAATCACAGGATGAAGCTGTGCAAAAAGTGGTGGAGTTTATGGATACCTACTC
TTTAAGCCAGGAAGACTTTGACACAATTGTTGAATTATCAAAATTTAAG
Conservation Information
Conserved circRNAs osi_circ_003196* osi_circ_009126
PMCS 0.243968088
Functional Information
Coding potential Y
Potential coding position 21449100-21450940(+)
Potential amino acid sequence MNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGG
WLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKDEAVQKVV
EFMDTYSLSQEDFDTIVELSKFKENYINYRPITVGKDDSGVKRMNFLARAAESIADADIVNVQI
RRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSH
ILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSK
FKENYINYRPITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPA
ALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTL
LLRQLTDPLKTMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSKFKENYINYRPITVGKDDSGVK
RMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFG
GWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKDEAVQKV
VEFMDTYSLSQEDFDTIVELSKFK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017